C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: TCF3 (E2A) fusion partner
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000108641 Tfpt-001 ENSMUSG00000006335 10090 - 7:3620324-3629929 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000108641
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000108641 2.481±0.54 1.403±0.57 4.596±0.66 6.658±2.29 2.020±0.71 2.078±0.97 2.424±0.76 2.452±0.58 3.658±2.46 2.190±0.37 2.577±0.77 2.640±2.11 7.374±3.18 4.998±1.85

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005NN CIL_0005NN_0002 CGP 7:3617373-3629929
CIL_0005O3 CIL_0005O3_0002 CGP 7:3620324-3642486

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 ISS DNA binding
GO:0005515 IEA protein binding
GO:0005634 ISS nucleus
GO:0005730 IEA nucleolus
GO:0005737 ISS cytoplasm
GO:0005884 ISS actin filament
GO:0006281 IEA DNA repair
GO:0006310 IEA DNA recombination
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006915 ISS apoptotic process
GO:0019901 ISS protein kinase binding
GO:0031011 IEA Ino80 complex
GO:0043065 IEA positive regulation of apoptotic process
GO:0046982 IEA protein heterodimerization activity
GO:0097190 ISS apoptotic signaling pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000391757 TFPT-005 protein_coding Homo_sapiens 0 573
ENST00000391758 TFPT-002 protein_coding Homo_sapiens 0 795
ENST00000391759 TFPT-003 protein_coding Homo_sapiens 0 817
ENST00000420715 TFPT-006 nonsense_mediated_decay Homo_sapiens 0 387
ENST00000485876 NDUFA3-001 protein_coding Homo_sapiens 8e-39 165
ENST00000610802 TFPT-006 nonsense_mediated_decay Homo_sapiens 0 387
ENST00000611344 TFPT-002 protein_coding Homo_sapiens 0 795
ENST00000611514 TFPT-208 protein_coding Homo_sapiens 0 817
ENST00000611935 TFPT-204 protein_coding Homo_sapiens 0 817
ENST00000614788 TFPT-201 protein_coding Homo_sapiens 0 817
ENST00000615094 TFPT-004 protein_coding Homo_sapiens 0 571
ENST00000615534 TFPT-202 protein_coding Homo_sapiens 0 817
ENST00000615620 TFPT-205 protein_coding Homo_sapiens 0 817
ENST00000616277 TFPT-206 protein_coding Homo_sapiens 0 817
ENST00000616798 TFPT-003 protein_coding Homo_sapiens 0 817
ENST00000617348 TFPT-203 protein_coding Homo_sapiens 0 817
ENST00000619581 TFPT-207 protein_coding Homo_sapiens 0 817
ENST00000621091 TFPT-005 protein_coding Homo_sapiens 0 573
ENST00000622523 NDUFA3-001 protein_coding Homo_sapiens 8e-39 165

Loading