C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: TCF3 (E2A) fusion partner
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000155592 Tfpt-002 ENSMUSG00000006335 10090 - 7:3620324-3629884 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000155592
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000155592 2.977±1.23 1.383±0.85 6.066±0.92 5.310±1.35 1.301±0.60 1.289±0.47 2.065±0.88 2.243±0.63 2.156±1.01 1.619±0.50 4.114±1.15 4.249±3.69 3.755±1.22 5.811±0.78

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005NN CIL_0005NN_0002 CGP 7:3617373-3629929
CIL_0005O3 CIL_0005O3_0002 CGP 7:3620324-3642486

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 ISS DNA binding
GO:0005634 ISS nucleus
GO:0005737 ISS cytoplasm
GO:0005884 ISS actin filament
GO:0006281 IEA DNA repair
GO:0006310 IEA DNA recombination
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006915 ISS apoptotic process
GO:0019901 ISS protein kinase binding
GO:0097190 ISS apoptotic signaling pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000391757 TFPT-005 protein_coding Homo_sapiens 0 573
ENST00000391758 TFPT-002 protein_coding Homo_sapiens 0 867
ENST00000391759 TFPT-003 protein_coding Homo_sapiens 0 889
ENST00000420715 TFPT-006 nonsense_mediated_decay Homo_sapiens 0 427
ENST00000485876 NDUFA3-001 protein_coding Homo_sapiens 4.99997e-41 172
ENST00000610802 TFPT-006 nonsense_mediated_decay Homo_sapiens 0 427
ENST00000611344 TFPT-002 protein_coding Homo_sapiens 0 867
ENST00000611514 TFPT-208 protein_coding Homo_sapiens 0 889
ENST00000611935 TFPT-204 protein_coding Homo_sapiens 0 889
ENST00000614788 TFPT-201 protein_coding Homo_sapiens 0 889
ENST00000615094 TFPT-004 protein_coding Homo_sapiens 0 571
ENST00000615534 TFPT-202 protein_coding Homo_sapiens 0 889
ENST00000615620 TFPT-205 protein_coding Homo_sapiens 0 889
ENST00000616277 TFPT-206 protein_coding Homo_sapiens 0 889
ENST00000616798 TFPT-003 protein_coding Homo_sapiens 0 889
ENST00000617348 TFPT-203 protein_coding Homo_sapiens 0 889
ENST00000619581 TFPT-207 protein_coding Homo_sapiens 0 889
ENST00000621091 TFPT-005 protein_coding Homo_sapiens 0 573
ENST00000622523 NDUFA3-001 protein_coding Homo_sapiens 4.99997e-41 172

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