C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cyclin-dependent kinase 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000618146 CDK5-201 ENSG00000164885 9606 - 7:151053812-151057965 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainMuscleOvaryPlacentaTestisENST00000618146
Transcript ID Brain Muscle Ovary Placenta Testis
ENST00000618146 28.639±9.23 2.485±0.00 15.554±0.00 12.976±0.00 7.002±1.38

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008T1 CIL_0008T1_0001 VISTA 7:150668461-151272977
CIL_0004ET CIL_0004ET_0001 CGP 7:151048292-151058530
CIL_0004ES CIL_0004ES_0001 CGP 7:151053812-151076527

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001764 TAS neuron migration
GO:0004672 TAS:IEA protein kinase activity
GO:0004674 ISS protein serine/threonine kinase activity
GO:0004713 IEA protein tyrosine kinase activity
GO:0005176 ISS ErbB-2 class receptor binding
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005634 ISS nucleus
GO:0005737 ISS cytoplasm
GO:0005829 TAS cytosol
GO:0006468 IEA protein phosphorylation
GO:0007049 IEA cell cycle
GO:0007268 TAS synaptic transmission
GO:0007411 TAS axon guidance
GO:0007416 TAS synapse assembly
GO:0007596 TAS blood coagulation
GO:0008283 TAS cell proliferation
GO:0009790 ISS embryo development
GO:0014069 ISS postsynaptic density
GO:0016020 ISS membrane
GO:0016079 TAS synaptic vesicle exocytosis
GO:0016301 ISS kinase activity
GO:0016310 IDA phosphorylation
GO:0016772 IEA transferase activity, transferring phosphorus-containing groups
GO:0018105 IDA peptidyl-serine phosphorylation
GO:0030054 IEA cell junction
GO:0030182 ISS neuron differentiation
GO:0030424 ISS axon
GO:0030425 ISS dendrite
GO:0030426 ISS growth cone
GO:0030549 ISS acetylcholine receptor activator activity
GO:0031175 ISS neuron projection development
GO:0031594 ISS neuromuscular junction
GO:0036465 NAS synaptic vesicle recycling
GO:0042981 TAS regulation of apoptotic process
GO:0043025 ISS neuronal cell body
GO:0043125 ISS ErbB-3 class receptor binding
GO:0043525 ISS positive regulation of neuron apoptotic process
GO:0045211 IEA postsynaptic membrane
GO:0045861 IMP negative regulation of proteolysis
GO:0045892 IMP negative regulation of transcription, DNA-templated
GO:0048167 ISS regulation of synaptic plasticity
GO:0048488 TAS synaptic vesicle endocytosis
GO:0048511 IEA rhythmic process
GO:0048675 TAS axon extension
GO:0048709 IDA oligodendrocyte differentiation
GO:0050321 ISS tau-protein kinase activity
GO:0051301 IEA cell division
GO:0051402 TAS neuron apoptotic process
GO:0061001 ISS regulation of dendritic spine morphogenesis
GO:0071156 TAS regulation of cell cycle arrest
GO:1901215 IDA negative regulation of neuron death
GO:2000251 TAS positive regulation of actin cytoskeleton reorganization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000030814 Cdk5-201 protein_coding Mus_musculus 0 1352

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