C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cell cycle associated protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000618582 CAPRIN1-201 ENSG00000135387 9606 + 11:34052381-34100464 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryTestisENST00000618582
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Testis
ENST00000618582 13.083±0.00 4.623±0.00 5.097±0.00 11.679±0.00 9.941±0.75 3.203±0.28 2.543±0.00 4.000±0.00 4.351±0.00 6.316±1.08 13.808±0.00 14.892±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000929 CIL_000929_0001 VISTA 11:33642739-34246310

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000111147 Caprin1-002 protein_coding Mus_musculus 0 4133
ENSMUST00000028607 Caprin1-001 protein_coding Mus_musculus 0 4104
ENSMUST00000143349 Caprin1-016 protein_coding Mus_musculus 0 863
ENSMUST00000143188 Caprin1-008 protein_coding Mus_musculus 0 861
ENSMUST00000141750 Caprin1-007 processed_transcript Mus_musculus 0 795
ENSMUST00000132537 Caprin1-013 retained_intron Mus_musculus 0 649
ENSMUST00000149175 Caprin1-014 retained_intron Mus_musculus 0 601
ENSMUST00000145770 Caprin1-005 retained_intron Mus_musculus 0 553
ENSMUST00000137390 Caprin1-012 retained_intron Mus_musculus 0 351
ENSMUST00000145697 Caprin1-004 processed_transcript Mus_musculus 0 326
ENSMUST00000128477 Caprin1-011 processed_transcript Mus_musculus 0 303
ENSMUST00000146527 Caprin1-003 retained_intron Mus_musculus 0 298
ENSMUST00000145606 Caprin1-015 protein_coding Mus_musculus 0 272
ENSMUST00000155733 Caprin1-006 processed_transcript Mus_musculus 0 239

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