C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: collagen, type V, alpha 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000618828 COL5A2-201 ENSG00000204262 9606 - 2:189031915-189179879 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainLiverLungMuscleOvaryPlacentaTestisENST00000618828
Transcript ID Adrenal Brain Liver Lung Muscle Ovary Placenta Testis
ENST00000618828 0.987±0.00 0.574±0.00 0.341±0.00 1.927±0.00 0.228±0.00 15.474±0.00 36.950±0.00 2.442±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004J6 CIL_0004J6_0001 CGP 2:188974320-189179879
CIL_0000Q1 CIL_0000Q1_0001 CGP 2:189031896-189475565

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005201 IEA extracellular matrix structural constituent
GO:0005581 IEA collagen trimer

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000086430 Col5a2-001 protein_coding Mus_musculus 0 4215
ENSMUST00000134681 Col5a2-002 retained_intron Mus_musculus 0 1498
ENSMUST00000150143 Col5a2-003 retained_intron Mus_musculus 0 523

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