C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: coatomer protein complex, subunit zeta 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000621465 COPZ2-001 ENSG00000005243 9606 - 17:48026171-48037782 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000621465
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000621465 26.916±0.00 9.069±0.00 0.137±0.00 4.765±0.00 25.598±25.16 9.658±8.34 7.096±6.10 5.895±0.00 11.273±5.39 9.467±8.50 26.345±0.00 15.804±6.55 33.304±22.93 16.553±1.42

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007RQ CIL_0007RQ_0001 VISTA 17:47700006-48306250
CIL_0007WA CIL_0007WA_0001 VISTA 17:47751636-48352675
CIL_00097B CIL_00097B_0001 VISTA 17:47849190-48450331

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005801 NAS cis-Golgi network
GO:0006810 IEA transport
GO:0006886 NAS intracellular protein transport
GO:0015031 IEA protein transport
GO:0016192 IEA vesicle-mediated transport
GO:0030126 NAS COPI vesicle coat

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000018816 Copz2-001 protein_coding Mus_musculus 0 830
ENSMUST00000147710 Copz2-005 nonsense_mediated_decay Mus_musculus 0 436
ENSMUST00000154191 Copz2-004 retained_intron Mus_musculus 0 377
ENSMUST00000145633 Copz2-003 nonsense_mediated_decay Mus_musculus 0 231
ENSMUST00000155696 Copz2-002 retained_intron Mus_musculus 1e-37 161

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