C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cadherin 13
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000622885 CDH13-203 ENSG00000140945 9606 + 16:82858356-83796608 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalColonKidneyLiverMuscleOvaryPlacentaTestisENST00000622885
Transcript ID Adrenal Colon Kidney Liver Muscle Ovary Placenta Testis
ENST00000622885 1.830±0.00 0.352±0.00 1.919±0.00 0.363±0.00 2.149±0.00 0.768±0.00 1.478±0.00 0.406±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003NV CIL_0003NV_0001 CGP 16:82147798-83800640
CIL_0008L6 CIL_0008L6_0001 VISTA 16:82434004-83036442
CIL_0005JS CIL_0005JS_0001 CGP 16:82626803-83819737

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0016020 IEA membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000117160 Cdh13-001 protein_coding Mus_musculus 0 2021
ENSMUST00000148836 Cdh13-006 retained_intron Mus_musculus 0 824
ENSMUST00000151842 Cdh13-007 processed_transcript Mus_musculus 0 564

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