C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cadherin 13
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000117160 Cdh13-001 ENSMUSG00000031841 10090 + 8:118283733-119324921 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000117160
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000117160 22.317±5.95 4.876±0.95 12.672±1.63 17.875±6.52 18.357±3.18 9.094±0.60 52.304±4.08 6.409±0.81 0.486±0.35 16.644±0.98 21.790±1.78 5.802±2.00 1.017±0.67 1.981±1.22

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003NV CIL_0003NV_0002 CGP 8:117791645-119324921
CIL_0008L6 CIL_0008L6_0002 VISTA 8:118077907-118680248
CIL_0005JS CIL_0005JS_0002 CGP 8:118283733-119348927

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001938 IEA positive regulation of endothelial cell proliferation
GO:0001954 IEA positive regulation of cell-matrix adhesion
GO:0002040 IEA sprouting angiogenesis
GO:0005509 IEA calcium ion binding
GO:0005515 IPI protein binding
GO:0005615 IEA extracellular space
GO:0005737 IEA cytoplasm
GO:0005886 IDA plasma membrane
GO:0005901 IEA caveola
GO:0005925 IEA focal adhesion
GO:0007162 IEA negative regulation of cell adhesion
GO:0007266 IEA Rho protein signal transduction
GO:0008285 IEA negative regulation of cell proliferation
GO:0009897 IDA external side of plasma membrane
GO:0016339 IEA calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules
GO:0016601 IEA Rac protein signal transduction
GO:0030032 IEA lamellipodium assembly
GO:0030100 IEA regulation of endocytosis
GO:0030169 IEA low-density lipoprotein particle binding
GO:0030335 IEA positive regulation of cell migration
GO:0031225 IEA anchored component of membrane
GO:0042058 IEA regulation of epidermal growth factor receptor signaling pathway
GO:0042803 IDA protein homodimerization activity
GO:0043005 IEA neuron projection
GO:0043542 IEA endothelial cell migration
GO:0043616 IEA keratinocyte proliferation
GO:0045296 IEA cadherin binding
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:0048661 IEA positive regulation of smooth muscle cell proliferation
GO:0050850 IEA positive regulation of calcium-mediated signaling
GO:0050927 IEA positive regulation of positive chemotaxis
GO:0051668 IEA localization within membrane
GO:0055096 IEA low-density lipoprotein particle mediated signaling
GO:0055100 IDA adiponectin binding
GO:0070062 IEA extracellular vesicular exosome
GO:0071813 IEA lipoprotein particle binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000268613 CDH13-009 protein_coding Homo_sapiens 0 2494
ENST00000428848 CDH13-005 protein_coding Homo_sapiens 0 2002
ENST00000431540 CDH13-003 protein_coding Homo_sapiens 0 691
ENST00000539548 CDH13-006 nonsense_mediated_decay Homo_sapiens 0 2167
ENST00000562601 CDH13-011 nonsense_mediated_decay Homo_sapiens 0 220
ENST00000565636 CDH13-004 protein_coding Homo_sapiens 0 691
ENST00000566333 CDH13-014 retained_intron Homo_sapiens 0 544
ENST00000566620 CDH13-201 protein_coding Homo_sapiens 0 2494
ENST00000567109 CDH13-001 protein_coding Homo_sapiens 0 2708
ENST00000568770 CDH13-013 nonsense_mediated_decay Homo_sapiens 0 220
ENST00000569144 CDH13-012 nonsense_mediated_decay Homo_sapiens 0 311
ENST00000569454 CDH13-015 processed_transcript Homo_sapiens 0 996
ENST00000615627 CDH13-202 protein_coding Homo_sapiens 0 1199
ENST00000622885 CDH13-203 protein_coding Homo_sapiens 0 2021

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