C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0008L6_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
hs1959 VISTA 9606 16:82434004-83036442
GeneTranscriptPositionBiotype
ENSG00000140945 (CDH13)
cadherin 13 		ENST00000268613 (CDH13-009) 82626965-83795376 protein_coding
ENST00000428848 (CDH13-005) 82626970-83795077 protein_coding
ENST00000431540 (CDH13-003) 82626970-83181094 protein_coding
ENST00000539548 (CDH13-006) 82626970-83795173 nonsense_mediated_decay
ENST00000562307 (CDH13-016) 83654820-83670881 processed_transcript
ENST00000562601 (CDH13-011) 82626968-83032059 nonsense_mediated_decay
ENST00000565636 (CDH13-004) 82626970-83181025 protein_coding
ENST00000566333 (CDH13-014) 82626971-83032313 retained_intron
ENST00000566620 (CDH13-201) 82858356-83796608 protein_coding
ENST00000567109 (CDH13-001) 82626803-83800640 protein_coding
ENST00000567445 (CDH13-007) 82627039-82859718 protein_coding
ENST00000568770 (CDH13-013) 82626969-83032121 nonsense_mediated_decay
ENST00000569144 (CDH13-012) 82626966-83032144 nonsense_mediated_decay
ENST00000569454 (CDH13-015) 82925958-83486655 processed_transcript
ENST00000569455 (CDH13-010) 82627039-82723105 processed_transcript
ENST00000615627 (CDH13-202) 83670578-83796608 protein_coding
ENST00000622885 (CDH13-203) 82858356-83796608 protein_coding
ENSG00000221395 (AC099506.1)
 ENST00000408468 (AC099506.1-201) 82842086-82842200 miRNA
ENSG00000259873 (RP11-481E4.1)
 ENST00000563948 (RP11-481E4.1-001) 82434828-82435381 processed_pseudogene
ENSG00000260832 (CTD-3253I12.1)
 ENST00000565238 (CTD-3253I12.1-001) 82953230-82990298 antisense
ENSG00000260862 (RP11-22H5.2)
 ENST00000567359 (RP11-22H5.2-001) 82773319-82829638 sense_intronic
ENSG00000261176 (RP11-2L4.1)
 ENST00000565374 (RP11-2L4.1-001) 82554049-82575210 lincRNA
ENSG00000263360 (RN7SL134P)
RNA, 7SL, cytoplasmic 134, pseudogene 		ENST00000579756 (RN7SL134P-201) 82844455-82844757 misc_RNA
ENSG00000280044 (RP11-22H5.1)
 ENST00000623074 (RP11-22H5.1-001) 82727474-82727694 TEC
CIL_0008L6_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
hs1959 VISTA 10090 8:118077907-118680248
GeneTranscriptPositionBiotype
ENSMUSG00000031841 (Cdh13)
cadherin 13 		ENSMUST00000117160 (Cdh13-001) 118283733-119324921 protein_coding
ENSMUST00000123567 (Cdh13-002) 118314413-118856206 processed_transcript
ENSMUST00000129548 (Cdh13-004) 118283796-118757658 retained_intron
ENSMUST00000142551 (Cdh13-005) 118283775-118968868 retained_intron
ENSMUST00000145849 (Cdh13-003) 118283755-118852758 retained_intron
ENSMUST00000148836 (Cdh13-006) 118283797-119202402 retained_intron
ENSMUST00000151842 (Cdh13-007) 119277411-119314116 processed_transcript

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008L6_0001ENSG00000140945ENST00000268613ENST00000428848ENST00000431540ENST00000539548ENST00000562307ENST00000562601ENST00000565636ENST00000566333ENST00000566620ENST00000567109ENST00000567445ENST00000568770ENST00000569144ENST00000569454ENST00000569455ENST00000615627ENST00000622885ENSG00000221395ENST00000408468ENSG00000259873ENST00000563948ENSG00000260832ENST00000565238ENSG00000260862ENST00000567359ENSG00000261176ENST00000565374ENSG00000263360ENST00000579756ENSG00000280044ENST00000623074CIL_0008L6_0002ENSMUSG00000031841ENSMUST00000117160ENSMUST00000123567ENSMUST00000129548ENSMUST00000142551ENSMUST00000145849ENSMUST00000148836ENSMUST00000151842
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008L6_0001ENSG00000140945ENST00000268613ENST00000428848ENST00000431540ENST00000539548ENST00000566333ENST00000566620ENST00000567109ENST00000569454ENST00000615627ENST00000622885ENSG00000221395ENST00000408468ENSG00000259873ENST00000563948ENSG00000260832ENST00000565238ENSG00000260862ENST00000567359ENSG00000261176ENST00000565374ENSG00000263360ENST00000579756ENSG00000280044ENST00000623074CIL_0008L6_0002ENSMUSG00000031841ENSMUST00000117160ENSMUST00000129548ENSMUST00000142551
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000140945 ENST00000268613 N/A N/A 0.619±0.00 N/A N/A N/A N/A 0.026±0.00 0.913±0.00 N/A 3.267±0.00 N/A 0.521±0.00 N/A
ENST00000428848 6.182±0.00 N/A N/A N/A N/A N/A 21.140±0.00 N/A N/A 5.564±0.00 N/A N/A N/A N/A
ENST00000431540 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.010±0.00 N/A
ENST00000539548 N/A N/A 0.936±0.00 5.119±0.00 0.777±0.00 0.322±0.00 5.642±0.00 N/A N/A N/A 1.910±0.00 N/A N/A N/A
ENST00000562307 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000562601 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000565636 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000566333 N/A N/A N/A N/A 5.005±0.00 N/A N/A N/A 3.075±0.00 N/A N/A N/A N/A N/A
ENST00000566620 6.558±0.00 4.791±0.00 N/A 7.665±2.50 2.960±1.79 2.270±2.11 13.380±6.49 1.678±0.00 0.382±0.00 2.398±1.24 4.219±0.05 1.655±0.53 2.810±0.95 2.094±0.00
ENST00000567109 N/A N/A N/A N/A N/A N/A N/A 0.038±0.00 0.192±0.00 0.330±0.00 N/A N/A N/A N/A
ENST00000567445 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000568770 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000569144 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000569454 N/A N/A N/A N/A N/A N/A 9.090±0.00 N/A N/A 4.109±0.00 5.425±0.00 1.000±0.00 N/A N/A
ENST00000569455 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000615627 3.586±0.00 2.789±0.00 N/A 7.559±0.00 7.809±0.00 2.997±0.00 N/A N/A 0.369±0.16 N/A 1.656±0.00 2.816±0.00 0.663±0.00 2.356±1.57
ENST00000622885 N/A 1.830±0.00 N/A N/A N/A 0.352±0.00 N/A 1.919±0.00 0.363±0.00 N/A 2.149±0.00 0.768±0.00 1.478±0.00 0.406±0.00
ENSG00000221395 ENST00000408468 0.724±0.00 N/A N/A 0.417±0.00 0.229±0.00 0.121±0.00 0.097±0.00 0.067±0.00 0.132±0.00 0.306±0.00 0.079±0.00 N/A N/A 0.330±0.00
ENSG00000259873 ENST00000563948 0.049±0.00 0.026±0.00 N/A N/A 0.051±0.00 0.072±0.00 N/A 0.052±0.00 0.023±0.00 0.024±0.00 0.070±0.00 0.040±0.00 N/A 0.115±0.00
ENSG00000260832 ENST00000565238 0.030±0.00 N/A 0.222±0.00 0.112±0.11 0.143±0.00 0.157±0.00 0.278±0.25 N/A 0.240±0.00 0.668±0.00 1.111±0.00 N/A 0.045±0.00 0.040±0.03
ENSG00000260862 ENST00000567359 0.024±0.00 0.077±0.00 0.078±0.00 0.009±0.00 0.055±0.02 0.032±0.01 0.128±0.09 0.032±0.00 0.016±0.00 0.013±0.01 0.002±0.00 0.028±0.01 0.006±0.00 0.017±0.00
ENSG00000261176 ENST00000565374 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.638±0.60
ENSG00000263360 ENST00000579756 0.068±0.00 0.201±0.00 N/A N/A N/A 0.060±0.00 0.141±0.00 0.346±0.07 0.876±0.00 0.062±0.00 N/A 0.286±0.04 0.504±0.23 0.604±0.42
ENSG00000280044 ENST00000623074 N/A N/A N/A N/A N/A 2.362±0.00 1.223±1.11 N/A 0.872±0.00 N/A 9.624±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000031841 ENSMUST00000117160 22.317±5.95 4.876±0.95 12.672±1.63 17.875±6.52 18.357±3.18 9.094±0.60 52.304±4.08 6.409±0.81 0.486±0.35 16.644±0.98 21.790±1.78 5.802±2.00 1.017±0.67 1.981±1.22
ENSMUST00000123567 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000129548 N/A 4.847±0.74 N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.489±0.00 N/A N/A
ENSMUST00000142551 N/A N/A N/A 7.469±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000145849 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000148836 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000151842 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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