C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: spleen focus forming virus (SFFV) proviral integration oncogene spi1b
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSDARG00000000767 spi1b 7955 - 7:33979183-33993855 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSDART00000000841 spi1b-001 33983420-33993855 protein_coding
  ENSDART00000036729 spi1b-201 33979183-33993538 protein_coding
  ENSDART00000093279 spi1b-202 33979183-33993538 protein_coding
  ENSDART00000126831 spi1b-203 33979938-33993558 protein_coding
  ENSDART00000129949 spi1b-002 33983420-33993825 protein_coding

Danio rerio EnsemblZv9

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000000841ENSDART00000036729ENSDART00000093279ENSDART00000126831
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000000841 1.260±0.00 5.393±0.00 N/A N/A N/A
ENSDART00000036729 0.834±0.18 5.173±0.00 23.807±0.00 N/A 1.638±0.00
ENSDART00000093279 1.390±0.29 3.174±0.47 15.068±1.32 0.167±0.00 1.460±0.00
ENSDART00000126831 1.551±0.03 5.530±0.00 31.659±9.14 0.128±0.00 5.003±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002LM CIL_0002LM_0001 CGP 7:33979183-34050526

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005634 IEA nucleus
GO:0006355 IEA regulation of transcription, DNA-dependent
GO:0010628 IMP positive regulation of gene expression
GO:0030099 IMP myeloid cell differentiation
GO:0030223 IMP neutrophil differentiation
GO:0030225 IMP macrophage differentiation
GO:0043565 IEA sequence-specific DNA binding
GO:0045647 IMP negative regulation of erythrocyte differentiation
GO:0048821 IMP erythrocyte development

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000066336 SPI1 Spi-1 proto-oncogene protein_coding Homo_sapiens
ENSMUSG00000002111 Spi1 spleen focus forming virus (SFFV) proviral integration oncogene protein_coding Mus_musculus

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