C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0002LM_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000000767-ENSDARG00000000442 CGP 7955 7:33979183-34050526
GeneTranscriptPositionBiotype
ENSDARG00000000423 ()
 ENSDART00000138914 () 33964184-33979710 protein_coding
ENSDARG00000000442 (slc39a13)
solute carrier family 39 (zinc transporter), member 13 		ENSDART00000113245 (slc39a13-201) 34030369-34050526 protein_coding
ENSDART00000121972 (slc39a13-001) 34028400-34049048 protein_coding
ENSDARG00000000767 (spi1b)
spleen focus forming virus (SFFV) proviral integration oncogene spi1b 		ENSDART00000000841 (spi1b-001) 33983420-33993855 protein_coding
ENSDART00000036729 (spi1b-201) 33979183-33993538 protein_coding
ENSDART00000093279 (spi1b-202) 33979183-33993538 protein_coding
ENSDART00000126831 (spi1b-203) 33979938-33993558 protein_coding
ENSDART00000129949 (spi1b-002) 33983420-33993825 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_0002LM_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000066336-ENSG00000165915 CGP 9606 11:47354860-47416501
GeneTranscriptPositionBiotype
ENSG00000066336 (SPI1)
Spi-1 proto-oncogene 		ENST00000227163 (SPI1-004) 47354913-47378391 protein_coding
ENST00000378538 (SPI1-001) 47354860-47378576 protein_coding
ENST00000533030 (SPI1-003) 47355101-47378523 protein_coding
ENST00000533968 (SPI1-002) 47358181-47378487 protein_coding
ENSG00000165915 (SLC39A13)
solute carrier family 39 (zinc transporter), member 13 		ENST00000354884 (SLC39A13-011) 47408631-47416496 protein_coding
ENST00000362021 (SLC39A13-012) 47408629-47416501 protein_coding
ENST00000524886 (SLC39A13-013) 47414862-47415434 processed_transcript
ENST00000524928 (SLC39A13-003) 47410085-47416494 protein_coding
ENST00000526614 (SLC39A13-004) 47409591-47413697 protein_coding
ENST00000527091 (SLC39A13-005) 47409821-47412039 protein_coding
ENST00000527829 (SLC39A13-014) 47414437-47415416 processed_transcript
ENST00000528979 (SLC39A13-009) 47414296-47415095 processed_transcript
ENST00000529740 (SLC39A13-006) 47412302-47413880 processed_transcript
ENST00000531419 (SLC39A13-010) 47408605-47413778 protein_coding
ENST00000531865 (SLC39A13-008) 47408628-47414901 protein_coding
ENST00000531974 (SLC39A13-007) 47408584-47412393 protein_coding
ENST00000533076 (SLC39A13-001) 47407132-47416495 protein_coding
ENSG00000255197 (RP11-750H9.5)
 ENST00000527426 (RP11-750H9.5-003) 47383148-47395640 antisense
ENST00000532340 (RP11-750H9.5-001) 47383544-47409190 antisense
ENST00000532943 (RP11-750H9.5-002) 47383249-47409092 antisense

Homo sapiens Ensembl (GRCh38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002LM_0001ENSDARG00000000423ENSDART00000138914ENSDARG00000000442ENSDART00000113245ENSDART00000121972ENSDARG00000000767ENSDART00000000841ENSDART00000036729ENSDART00000093279ENSDART00000126831ENSDART00000129949CIL_0002LM_0002ENSG00000066336ENST00000227163ENST00000378538ENST00000533030ENST00000533968ENSG00000165915ENST00000354884ENST00000362021ENST00000524886ENST00000524928ENST00000526614ENST00000527091ENST00000527829ENST00000528979ENST00000529740ENST00000531419ENST00000531865ENST00000531974ENST00000533076ENSG00000255197ENST00000527426ENST00000532340ENST00000532943
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002LM_0001ENSDARG00000000423ENSDART00000138914ENSDARG00000000442ENSDART00000113245ENSDART00000121972ENSDARG00000000767ENSDART00000000841ENSDART00000036729ENSDART00000093279ENSDART00000126831CIL_0002LM_0002ENSG00000066336ENST00000227163ENST00000378538ENST00000533030ENST00000533968ENSG00000165915ENST00000354884ENST00000362021ENST00000524928ENST00000528979ENST00000529740ENST00000531865ENST00000533076ENSG00000255197ENST00000527426ENST00000532340ENST00000532943
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000000423 ENSDART00000138914 N/A N/A N/A 2.548±0.02 N/A N/A 3.468±0.25 N/A 0.331±0.00 N/A 1.686±0.00 N/A N/A N/A
ENSDARG00000000442 ENSDART00000113245 N/A N/A N/A 1.189±0.22 N/A N/A 5.135±1.35 3.430±0.71 0.126±0.00 N/A 0.747±0.00 N/A N/A N/A
ENSDART00000121972 N/A N/A N/A 1.607±1.18 N/A N/A 5.329±3.02 3.218±0.00 0.637±0.00 N/A 0.711±0.00 N/A N/A N/A
ENSDARG00000000767 ENSDART00000000841 N/A N/A N/A 1.260±0.00 N/A N/A 5.393±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSDART00000036729 N/A N/A N/A 0.834±0.18 N/A N/A 5.173±0.00 23.807±0.00 N/A N/A 1.638±0.00 N/A N/A N/A
ENSDART00000093279 N/A N/A N/A 1.390±0.29 N/A N/A 3.174±0.47 15.068±1.32 0.167±0.00 N/A 1.460±0.00 N/A N/A N/A
ENSDART00000126831 N/A N/A N/A 1.551±0.03 N/A N/A 5.530±0.00 31.659±9.14 0.128±0.00 N/A 5.003±0.00 N/A N/A N/A
ENSDART00000129949 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000066336 ENST00000227163 19.456±0.00 17.184±0.00 N/A 5.332±0.00 9.405±0.00 0.757±0.00 3.328±0.00 3.746±1.36 1.977±0.00 20.365±16.70 0.545±0.41 2.755±2.08 14.870±8.73 2.414±1.26
ENST00000378538 22.786±0.00 25.464±0.00 0.828±0.00 2.516±1.52 5.025±1.77 2.908±1.89 2.365±1.84 2.622±1.83 3.667±2.97 29.372±23.78 0.383±0.00 7.436±8.03 28.891±12.90 3.895±3.44
ENST00000533030 N/A N/A N/A N/A N/A 2.419±0.00 N/A 3.231±0.00 N/A N/A 1.688±0.00 N/A N/A N/A
ENST00000533968 N/A N/A N/A N/A N/A N/A 0.606±0.00 N/A N/A N/A N/A N/A N/A 0.353±0.00
ENSG00000165915 ENST00000354884 7.167±0.00 12.376±0.00 2.308±0.00 2.512±1.99 1.537±0.00 11.259±0.00 4.072±3.13 32.969±0.00 4.857±0.00 15.259±0.00 3.856±0.00 14.289±7.32 27.791±8.48 25.735±0.00
ENST00000362021 2.286±0.00 3.279±0.00 N/A 0.977±0.00 N/A N/A N/A 5.408±4.47 2.438±0.00 1.957±1.14 N/A 0.738±0.00 12.064±0.00 N/A
ENST00000524886 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000524928 0.831±0.00 2.373±0.00 N/A N/A 1.231±0.00 N/A N/A N/A N/A 0.587±0.00 N/A 4.761±0.00 N/A 3.613±0.00
ENST00000526614 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000527091 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000527829 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000528979 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.108±0.00 N/A N/A
ENST00000529740 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.193±0.00 N/A N/A N/A
ENST00000531419 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000531865 N/A N/A N/A N/A N/A N/A N/A 0.793±0.00 N/A 0.519±0.00 N/A N/A 20.523±0.00 22.202±0.00
ENST00000531974 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000533076 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.314±0.00
ENSG00000255197 ENST00000527426 N/A 0.440±0.00 0.438±0.00 1.128±0.24 0.843±0.00 N/A 0.427±0.09 0.624±0.00 1.215±0.04 1.315±0.00 N/A 0.352±0.11 N/A 0.551±0.00
ENST00000532340 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.244±0.00 N/A
ENST00000532943 N/A N/A N/A 0.599±0.00 0.341±0.00 0.259±0.00 N/A 0.439±0.00 N/A 0.978±0.00 0.022±0.00 N/A N/A 0.145±0.00

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