C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: collagen, type I, alpha 1a
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSDARG00000012405 col1a1a 7955 + 3:23512288-23530699 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSDART00000009393 col1a1a-001 23512288-23529057 protein_coding
  ENSDART00000047010 col1a1a-201 23512303-23528137 protein_coding
  ENSDART00000140586 col1a1a-002 23526909-23530699 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000009393ENSDART00000047010ENSDART00000140586
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000009393 2.791±1.54 10.026±3.63 43.826±13.13 N/A 20.036±0.00
ENSDART00000047010 0.235±0.00 10.224±0.00 41.759±0.00 0.067±0.00 39.838±0.00
ENSDART00000140586 5.157±0.00 N/A N/A 0.317±0.00 N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005201 IEA extracellular matrix structural constituent
GO:0005515 IEA protein binding
GO:0005581 IEA collagen
GO:0005737 IDA cytoplasm
GO:0030278 IMP regulation of ossification
GO:0031101 IMP fin regeneration
GO:0033333 IMP fin development
GO:0033334 IMP fin morphogenesis
GO:0033339 IMP pectoral fin development

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000108821 COL1A1 collagen, type I, alpha 1 protein_coding Homo_sapiens
ENSMUSG00000001506 Col1a1 collagen, type I, alpha 1 protein_coding Mus_musculus

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