C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: collagen, type I, alpha 1a
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000009393 col1a1a-001 ENSDARG00000012405 7955 + 3:23512288-23529057 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyMuscleENSDART00000009393
Transcript ID Brain Heart Kidney Muscle
ENSDART00000009393 2.791±1.54 10.026±3.63 43.826±13.13 20.036±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005201 IEA extracellular matrix structural constituent
GO:0005515 IEA protein binding
GO:0005581 IEA collagen
GO:0005737 IDA cytoplasm
GO:0030278 IMP regulation of ossification
GO:0031101 IMP fin regeneration
GO:0033333 IMP fin development
GO:0033334 IMP fin morphogenesis
GO:0033339 IMP pectoral fin development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000001547 Col1a1-001 protein_coding Mus_musculus 0 2224
ENSMUST00000087883 Col3a1-001 protein_coding Mus_musculus 2e-22 113
ENSMUST00000186021 Col3a1-007 protein_coding Mus_musculus 0.0000000000008 79
ENST00000225964 COL1A1-001 protein_coding Homo_sapiens 3e-25 122
ENST00000297268 COL1A2-001 protein_coding Homo_sapiens 3e-30 139
ENST00000464916 COL1A2-003 retained_intron Homo_sapiens 2e-30 137
ENST00000481570 COL1A2-002 retained_intron Homo_sapiens 1e-24 121
ENST00000620463 COL1A2-201 protein_coding Homo_sapiens 2e-30 139

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