C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: collagen, type I, alpha 1a
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000140586 col1a1a-002 ENSDARG00000012405 7955 + 3:23526909-23530699 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainLiverENSDART00000140586
Transcript ID Brain Liver
ENSDART00000140586 5.157±0.00 0.317±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000087883 Col3a1-001 protein_coding Mus_musculus 8e-21 108
ENSMUST00000186021 Col3a1-007 protein_coding Mus_musculus 0.00000000004 73
ENST00000297268 COL1A2-001 protein_coding Homo_sapiens 1e-29 137
ENST00000464916 COL1A2-003 retained_intron Homo_sapiens 7e-30 135
ENST00000481570 COL1A2-002 retained_intron Homo_sapiens 4e-24 119
ENST00000620463 COL1A2-201 protein_coding Homo_sapiens 8e-30 137

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