C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: collagen, type I, alpha 1a
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000047010 col1a1a-201 ENSDARG00000012405 7955 + 3:23512303-23528137 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000047010
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000047010 0.235±0.00 10.224±0.00 41.759±0.00 0.067±0.00 39.838±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005201 IEA extracellular matrix structural constituent
GO:0005515 IEA protein binding
GO:0005581 IEA collagen

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000001547 Col1a1-001 protein_coding Mus_musculus 0 2222
ENSMUST00000087883 Col3a1-001 protein_coding Mus_musculus 8e-21 108
ENSMUST00000186021 Col3a1-007 protein_coding Mus_musculus 0.00000000004 73
ENST00000297268 COL1A2-001 protein_coding Homo_sapiens 2e-31 143
ENST00000464916 COL1A2-003 retained_intron Homo_sapiens 1e-31 141
ENST00000481570 COL1A2-002 retained_intron Homo_sapiens 8e-26 124
ENST00000620463 COL1A2-201 protein_coding Homo_sapiens 2e-31 143

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