C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RNA binding protein, fox-1 homolog (C. elegans) 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSDARG00000014746 rbfox1 7955 - 3:28135277-28579317 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSDART00000055534 rbfox1-002 28196460-28219330 retained_intron
  ENSDART00000122037 rbfox1-001 28135277-28226875 protein_coding
  ENSDART00000150888 rbfox1-005 28137124-28199594 protein_coding
  ENSDART00000151143 rbfox1-003 28190654-28271211 protein_coding
  ENSDART00000151178 rbfox1-004 28199555-28360120 protein_coding
  ENSDART00000151546 rbfox1-006 28196799-28579317 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000122037ENSDART00000150888
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000122037 44.137±21.82 1.608±1.69 0.277±0.10 0.089±0.00 3.204±0.00
ENSDART00000150888 N/A N/A N/A 0.062±0.00 N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0003723 IEA RNA binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006397 IEA mRNA processing
GO:0008380 IEA RNA splicing
GO:0021854 IMP hypothalamus development
GO:0043484 IEA regulation of RNA splicing

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000078328 RBFOX1 RNA binding protein, fox-1 homolog (C. elegans) 1 protein_coding Homo_sapiens
ENSMUSG00000008658 Rbfox1 RNA binding protein, fox-1 homolog (C. elegans) 1 protein_coding Mus_musculus

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