C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RNA binding protein, fox-1 homolog (C. elegans) 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000078328 RBFOX1 9606 + 16:6019094-7713338 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000311745 RBFOX1-001 7332750-7712504 protein_coding
  ENST00000340209 RBFOX1-201 7332750-7713338 protein_coding
  ENST00000355637 RBFOX1-002 7332750-7712504 protein_coding
  ENST00000422070 RBFOX1-009 6019703-7709781 protein_coding
  ENST00000436368 RBFOX1-011 7332750-7710844 protein_coding
  ENST00000535565 RBFOX1-005 6483179-7709776 protein_coding
  ENST00000547338 RBFOX1-008 6773809-7710844 protein_coding
  ENST00000547372 RBFOX1-010 6019593-7711458 protein_coding
  ENST00000547427 RBFOX1-012 6483324-7328793 processed_transcript
  ENST00000547605 RBFOX1-014 6019094-7653846 protein_coding
  ENST00000548749 RBFOX1-013 6019703-6723887 processed_transcript
  ENST00000550418 RBFOX1-003 6019131-7713338 protein_coding
  ENST00000551752 RBFOX1-007 6483793-7653846 protein_coding
  ENST00000552089 RBFOX1-006 6483386-7710763 protein_coding
  ENST00000553186 RBFOX1-004 6019131-7710840 protein_coding
  ENST00000564850 RBFOX1-015 7597217-7630626 retained_intron
  ENST00000567470 RBFOX1-018 7653866-7710819 protein_coding
  ENST00000569889 RBFOX1-017 7422778-7579785 processed_transcript
  ENST00000570188 RBFOX1-016 7664764-7710844 retained_intron
  ENST00000570626 RBFOX1-019 7510122-7595641 protein_coding
  ENST00000620507 RBFOX1-202 7332750-7713338 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverMuscleOvaryPlacentaTestisENST00000311745ENST00000340209ENST00000355637ENST00000436368ENST00000547372ENST00000547427ENST00000550418ENST00000552089ENST00000567470ENST00000569889ENST00000620507
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Muscle Ovary Placenta Testis
ENST00000311745 0.004±0.00 0.035±0.00 6.570±0.00 N/A 0.090±0.00 3.975±0.00 0.076±0.00 0.082±0.00 N/A 0.115±0.00 N/A 0.321±0.00
ENST00000340209 N/A N/A N/A 0.071±0.00 N/A 1.338±0.12 N/A N/A 9.257±8.05 N/A 0.091±0.00 N/A
ENST00000355637 N/A N/A N/A 0.203±0.00 N/A 2.928±0.84 N/A N/A 15.909±11.90 N/A N/A 0.115±0.00
ENST00000436368 N/A N/A N/A 0.222±0.00 N/A 4.872±0.00 N/A N/A 3.842±0.00 N/A N/A N/A
ENST00000547372 0.004±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.024±0.00 N/A
ENST00000547427 N/A 0.105±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000550418 N/A N/A 6.811±0.00 N/A N/A N/A N/A N/A N/A N/A 0.046±0.00 N/A
ENST00000552089 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.578±0.00
ENST00000567470 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.442±0.00 N/A
ENST00000569889 N/A N/A N/A 1.048±0.00 0.461±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000620507 N/A N/A N/A N/A N/A N/A 0.012±0.00 N/A N/A N/A 0.012±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000EQ CIL_0000EQ_0001 CGP 16:5084304-7713338
CIL_000882 CIL_000882_0001 VISTA 16:5441186-6042172
CIL_0000EP CIL_0000EP_0001 CGP 16:6019094-8590193

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0003723 NAS:IEA RNA binding
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005737 IDA cytoplasm
GO:0005802 IDA trans-Golgi network
GO:0006397 IEA mRNA processing
GO:0008022 IPI protein C-terminus binding
GO:0008380 IEA RNA splicing
GO:0043484 IEA regulation of RNA splicing
GO:0050658 NAS RNA transport
GO:0050885 IEA neuromuscular process controlling balance

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000014746 rbfox1 RNA binding protein, fox-1 homolog (C. elegans) 1 protein_coding Danio_rerio
ENSMUSG00000008658 Rbfox1 RNA binding protein, fox-1 homolog (C. elegans) 1 protein_coding Mus_musculus

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