C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RNA binding protein, fox-1 homolog (C. elegans) 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000122037 rbfox1-001 ENSDARG00000014746 7955 - 3:28135277-28226875 protein_coding

Danio rerio EnsemblZv9

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000122037
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000122037 44.137±21.82 1.608±1.69 0.277±0.10 0.089±0.00 3.204±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0003723 IEA RNA binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006397 IEA mRNA processing
GO:0008380 IEA RNA splicing
GO:0021854 IMP hypothalamus development
GO:0043484 IEA regulation of RNA splicing

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000056416 Rbfox1-201 protein_coding Mus_musculus 0 348
ENSMUST00000115841 Rbfox1-202 protein_coding Mus_musculus 0 436
ENST00000311745 RBFOX1-001 protein_coding Homo_sapiens 0 551
ENST00000340209 RBFOX1-201 protein_coding Homo_sapiens 0 551
ENST00000355637 RBFOX1-002 protein_coding Homo_sapiens 0 551
ENST00000422070 RBFOX1-009 protein_coding Homo_sapiens 0 547
ENST00000436368 RBFOX1-011 protein_coding Homo_sapiens 0 551
ENST00000535565 RBFOX1-005 protein_coding Homo_sapiens 1e-24 119
ENST00000547338 RBFOX1-008 protein_coding Homo_sapiens 0 547
ENST00000547372 RBFOX1-010 protein_coding Homo_sapiens 0 547
ENST00000547605 RBFOX1-014 protein_coding Homo_sapiens 0 527
ENST00000550418 RBFOX1-003 protein_coding Homo_sapiens 0 547
ENST00000551752 RBFOX1-007 protein_coding Homo_sapiens 0 547
ENST00000552089 RBFOX1-006 protein_coding Homo_sapiens 0 276
ENST00000553186 RBFOX1-004 protein_coding Homo_sapiens 0 1005
ENST00000567470 RBFOX1-018 protein_coding Homo_sapiens 0 329
ENST00000570188 RBFOX1-016 retained_intron Homo_sapiens 0 383
ENST00000570626 RBFOX1-019 protein_coding Homo_sapiens 0 472
ENST00000620507 RBFOX1-202 protein_coding Homo_sapiens 0 1009

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