C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RNA binding protein, fox-1 homolog (C. elegans) 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000008658 Rbfox1 10090 + 16:6809222-7412479 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000056416 Rbfox1-201 7069835-7412479 protein_coding
  ENSMUST00000115841 Rbfox1-202 6809222-7409813 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000056416ENSMUST00000115841
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000056416 0.016±0.00 0.102±0.01 N/A 16.709±7.12 1.061±0.76 0.043±0.01 4.385±1.21 0.238±0.06 0.022±0.01 0.608±0.21 43.636±2.26 0.080±0.03 0.010±0.00 0.037±0.02
ENSMUST00000115841 0.066±0.03 1.086±0.28 0.073±0.00 28.821±19.05 2.353±3.77 0.766±0.20 4.539±0.00 1.924±0.19 0.050±0.01 0.880±0.22 N/A 1.044±0.28 0.047±0.00 0.150±0.08

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000EQ CIL_0000EQ_0002 CGP 16:5244152-7412479
CIL_00090F CIL_00090F_0002 VISTA 16:6806398-7407046
CIL_0000EP CIL_0000EP_0002 CGP 16:6809222-8425136

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003723 IEA RNA binding
GO:0005515 IEA protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005737 IDA cytoplasm
GO:0005802 IEA trans-Golgi network
GO:0006397 IEA mRNA processing
GO:0008022 IEA protein C-terminus binding
GO:0008380 IEA RNA splicing
GO:0043484 IEA regulation of RNA splicing
GO:0050885 IGI neuromuscular process controlling balance

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000014746 rbfox1 RNA binding protein, fox-1 homolog (C. elegans) 1 protein_coding Danio_rerio
ENSG00000078328 RBFOX1 RNA binding protein, fox-1 homolog (C. elegans) 1 protein_coding Homo_sapiens

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