C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: hemicentin 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000020389 hmcn1-201 ENSDARG00000016936 7955 - 20:34182641-34316893 protein_coding

Danio rerio EnsemblZv9

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; HeartKidneyLiverENSDART00000020389
Transcript ID Heart Kidney Liver
ENSDART00000020389 0.532±0.28 0.101±0.00 0.024±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00065A CIL_00065A_0001 CGP 20:34181916-34365791

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005515 IEA protein binding
GO:0033333 IMP fin development
GO:0033334 IMP fin morphogenesis
GO:0071711 IMP basement membrane organization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000074783 Hmcn1-001 protein_coding Mus_musculus 0 265
ENSMUST00000137197 Hmcn1-003 protein_coding Mus_musculus 0 265
ENST00000271588 HMCN1-001 protein_coding Homo_sapiens 0 333

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