C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00065A_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000016936-ENSDARG00000031100 CGP 7955 20:34181916-34365791
GeneTranscriptPositionBiotype
ENSDARG00000016936 (hmcn1)
hemicentin 1 		ENSDART00000020389 (hmcn1-201) 34182641-34316893 protein_coding
ENSDART00000144705 (hmcn1-001) 34181916-34317215 protein_coding
ENSDART00000153128 (hmcn1-002) 34183532-34188886 protein_coding
ENSDARG00000031100 (ivns1abpa)
influenza virus NS1A binding protein a 		ENSDART00000061659 (ivns1abpa-001) 34351482-34365791 protein_coding
ENSDART00000135889 (ivns1abpa-003) 34362933-34364190 retained_intron
ENSDART00000144922 (ivns1abpa-005) 34358749-34362358 retained_intron
ENSDART00000153207 (ivns1abpa-004) 34345243-34357714 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_00065A_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000066842-ENSMUSG00000023150 CGP 10090 1:150562524-151364422
GeneTranscriptPositionBiotype
ENSMUSG00000023150 (Ivns1abp)
influenza virus NS1A binding protein 		ENSMUST00000023918 (Ivns1abp-001) 151344477-151364422 protein_coding
ENSMUST00000097543 (Ivns1abp-002) 151344518-151364415 protein_coding
ENSMUST00000111887 (Ivns1abp-003) 151344509-151356799 protein_coding
ENSMUST00000186745 (Ivns1abp-004) 151344578-151363365 nonsense_mediated_decay
ENSMUST00000190872 (Ivns1abp-005) 151361247-151362034 protein_coding
ENSMUSG00000066842 (Hmcn1)
hemicentin 1 		ENSMUST00000074783 (Hmcn1-001) 150562524-150993051 protein_coding
ENSMUST00000137197 (Hmcn1-003) 150563527-150993051 protein_coding
ENSMUST00000137909 (Hmcn1-004) 150577435-150580615 processed_transcript
ENSMUST00000151899 (Hmcn1-005) 150563711-150565604 retained_intron
ENSMUST00000155715 (Hmcn1-002) 150873748-150993435 retained_intron
ENSMUST00000177036 (Hmcn1-006) 150563684-150583212 protein_coding
ENSMUSG00000096851 (Gm22756)
predicted gene, 22756 		ENSMUST00000180118 (Gm22756-201) 151062004-151062110 snRNA
ENSMUSG00000097426 (Gm8941)
predicted gene 8941 		ENSMUST00000181451 (Gm8941-001) 151136507-151137780 processed_pseudogene
ENSMUSG00000099622 (RP23-373L1.1)
predicted gene 29188 		ENSMUST00000191173 (RP23-373L1.1-001) 151001040-151004577 lincRNA
ENSMUSG00000100595 (RP24-245K18.3)
predicted gene, 19087 		ENSMUST00000191430 (RP24-245K18.3-001) 151107915-151108860 processed_pseudogene
ENSMUSG00000102095 (RP24-245K18.4)
RIKEN cDNA C730036E19 gene 		ENSMUST00000188305 (RP24-245K18.4-001) 151138034-151142345 lincRNA

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00065A_0001ENSDARG00000016936ENSDART00000020389ENSDART00000144705ENSDART00000153128ENSDARG00000031100ENSDART00000061659ENSDART00000135889ENSDART00000144922ENSDART00000153207CIL_00065A_0002ENSMUSG00000023150ENSMUST00000023918ENSMUST00000097543ENSMUST00000111887ENSMUST00000186745ENSMUST00000190872ENSMUSG00000066842ENSMUST00000074783ENSMUST00000137197ENSMUST00000137909ENSMUST00000151899ENSMUST00000155715ENSMUST00000177036ENSMUSG00000096851ENSMUST00000180118ENSMUSG00000097426ENSMUST00000181451ENSMUSG00000099622ENSMUST00000191173ENSMUSG00000100595ENSMUST00000191430ENSMUSG00000102095ENSMUST00000188305
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00065A_0001ENSDARG00000016936ENSDART00000020389ENSDART00000144705ENSDART00000153128ENSDARG00000031100ENSDART00000061659CIL_00065A_0002ENSMUSG00000023150ENSMUST00000023918ENSMUST00000097543ENSMUST00000111887ENSMUST00000186745ENSMUST00000190872ENSMUSG00000066842ENSMUST00000074783ENSMUST00000137197ENSMUST00000137909ENSMUST00000155715ENSMUST00000177036ENSMUSG00000096851ENSMUST00000180118ENSMUSG00000097426ENSMUST00000181451ENSMUSG00000099622ENSMUST00000191173ENSMUSG00000100595ENSMUST00000191430ENSMUSG00000102095ENSMUST00000188305
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000016936 ENSDART00000020389 N/A N/A N/A N/A N/A N/A 0.532±0.28 0.101±0.00 0.024±0.00 N/A N/A N/A N/A N/A
ENSDART00000144705 N/A N/A N/A 0.073±0.04 N/A N/A N/A N/A N/A N/A 0.199±0.00 N/A N/A N/A
ENSDART00000153128 N/A N/A N/A N/A N/A N/A 4.717±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000031100 ENSDART00000061659 N/A N/A N/A 58.966±19.90 N/A N/A 20.060±10.43 34.163±7.04 6.421±0.00 N/A 16.271±0.00 N/A N/A N/A
ENSDART00000135889 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000144922 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000153207 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000023150 ENSMUST00000023918 18.003±1.06 N/A 24.602±4.68 47.100±27.21 10.342±2.59 25.648±6.62 101.392±20.15 64.728±6.10 25.993±19.79 20.156±2.91 40.971±2.01 47.497±36.08 18.867±8.32 18.070±6.67
ENSMUST00000097543 N/A 19.120±6.62 N/A N/A 11.644±0.00 19.508±7.99 N/A N/A 2.857±0.41 12.040±0.00 N/A 27.266±0.00 N/A N/A
ENSMUST00000111887 N/A 38.580±17.12 N/A N/A 9.733±0.63 16.272±5.67 N/A N/A 2.901±0.00 N/A N/A 37.848±8.00 N/A N/A
ENSMUST00000186745 N/A N/A 6.177±2.19 22.328±9.71 14.655±2.50 23.867±0.00 52.135±6.18 19.395±0.00 15.607±12.97 N/A N/A 40.524±18.33 7.245±0.89 17.394±0.00
ENSMUST00000190872 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 34.948±0.00 N/A
ENSMUSG00000066842 ENSMUST00000074783 N/A N/A 0.316±0.00 0.146±0.01 0.536±0.00 0.159±0.00 1.021±0.11 0.063±0.01 0.147±0.02 1.630±0.00 0.052±0.01 0.523±0.49 0.106±0.07 0.031±0.01
ENSMUST00000137197 0.177±0.00 0.142±0.00 0.338±0.16 N/A 0.742±0.02 0.605±0.26 0.679±0.42 0.080±0.04 0.271±0.03 3.043±0.00 0.044±0.00 0.450±0.28 0.081±0.00 0.064±0.00
ENSMUST00000137909 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.904±0.01 N/A N/A N/A
ENSMUST00000151899 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000155715 N/A 0.100±0.02 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000177036 N/A N/A N/A N/A N/A N/A N/A N/A 0.881±0.00 N/A N/A N/A 0.823±0.00 N/A
ENSMUSG00000096851 ENSMUST00000180118 N/A N/A N/A 12.177±0.00 N/A N/A N/A N/A 24.448±0.00 N/A N/A N/A N/A N/A
ENSMUSG00000097426 ENSMUST00000181451 0.032±0.00 N/A N/A N/A 0.377±0.06 0.160±0.00 0.042±0.02 0.443±0.12 8.638±1.49 0.137±0.06 N/A 0.212±0.12 0.047±0.00 0.034±0.00
ENSMUSG00000099622 ENSMUST00000191173 N/A N/A 0.038±0.00 N/A N/A N/A 0.151±0.07 0.054±0.00 0.019±0.00 0.093±0.00 N/A N/A 0.056±0.05 0.099±0.03
ENSMUSG00000100595 ENSMUST00000191430 N/A N/A N/A N/A N/A N/A N/A 0.067±0.00 N/A N/A N/A N/A 0.007±0.00 N/A
ENSMUSG00000102095 ENSMUST00000188305 0.034±0.01 N/A 0.048±0.00 0.018±0.00 0.083±0.03 0.144±0.05 0.069±0.01 N/A 0.168±0.00 0.061±0.01 0.038±0.00 0.027±0.00 N/A 0.029±0.00

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