C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ribosomal protein SA
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSDARG00000019181 rpsa 7955 - 6:7628873-7637147 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSDART00000114282 rpsa-002 7632789-7635116 protein_coding
  ENSDART00000135945 rpsa-001 7628873-7637147 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000114282ENSDART00000135945
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000114282 0.660±0.00 N/A N/A N/A N/A
ENSDART00000135945 62.396±69.58 247.087±373.26 43.660±61.39 406.918±0.00 318.003±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000028 IBA ribosomal small subunit assembly
GO:0000447 IBA endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000461 IBA endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0003735 IEA structural constituent of ribosome
GO:0005055 IEA laminin receptor activity
GO:0005622 IEA intracellular
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0005840 IEA ribosome
GO:0005886 IEA plasma membrane
GO:0006407 IBA rRNA export from nucleus
GO:0006412 IEA translation
GO:0007155 IEA cell adhesion
GO:0015935 IEA small ribosomal subunit
GO:0016020 IEA membrane
GO:0022627 IBA cytosolic small ribosomal subunit
GO:0030529 IEA ribonucleoprotein complex
GO:0030686 IBA 90S preribosome
GO:0043236 IEA laminin binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000168028 RPSA ribosomal protein SA protein_coding Homo_sapiens
ENSG00000205246 RPSAP58 ribosomal protein SA pseudogene 58 protein_coding Homo_sapiens
ENSMUSG00000032518 Rpsa ribosomal protein SA protein_coding Mus_musculus
ENSMUSG00000047676 Rpsa-ps10 ribosomal protein SA, pseudogene 10 protein_coding Mus_musculus

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