C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ribosomal protein SA
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000168028 RPSA 9606 + 3:39406689-39412542 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000301821 RPSA-001 39406689-39412542 protein_coding
  ENST00000443003 RPSA-002 39406735-39412434 protein_coding
  ENST00000444512 RPSA-009 39406763-39410849 nonsense_mediated_decay
  ENST00000458478 RPSA-008 39406733-39412059 protein_coding
  ENST00000475346 RPSA-006 39406718-39408195 retained_intron
  ENST00000477325 RPSA-005 39406716-39408986 retained_intron
  ENST00000478027 RPSA-003 39408537-39412438 processed_transcript
  ENST00000487876 RPSA-007 39406719-39408076 retained_intron
  ENST00000490490 RPSA-010 39408204-39410934 processed_transcript
  ENST00000495394 RPSA-004 39410259-39412434 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000301821ENST00000443003ENST00000458478ENST00000477325ENST00000478027
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000301821 N/A N/A 22.698±0.00 120.588±0.00 133.626±0.00 110.235±0.00 30.187±0.00 60.951±0.00 96.181±0.00 95.282±0.00 76.826±0.00 117.940±54.59 62.423±3.77 N/A
ENST00000443003 61.953±0.00 126.569±0.00 N/A 16.396±0.00 51.472±0.00 147.562±0.00 16.680±0.00 69.921±0.00 49.618±0.00 49.561±0.00 27.339±0.00 81.803±51.98 64.656±0.00 85.197±0.00
ENST00000458478 N/A N/A N/A 30.261±0.00 N/A 71.872±0.00 N/A 51.816±0.00 45.963±0.00 90.039±0.00 25.021±0.00 252.506±116.42 191.589±49.75 52.935±2.35
ENST00000477325 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 141.667±0.00 N/A N/A
ENST00000478027 67.747±0.00 251.082±0.00 N/A 32.423±0.00 75.882±0.00 60.265±0.00 N/A 35.806±0.00 17.624±0.00 66.506±0.00 N/A 293.607±87.26 230.496±48.88 67.804±26.52

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000146 CIL_000146_0001 CGP 3:39383348-39412542
CIL_00013R CIL_00013R_0001 CGP 3:39406689-39529479

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000028 IBA ribosomal small subunit assembly
GO:0000184 TAS nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0000447 IBA endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000461 IBA endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0003735 IEA:IBA structural constituent of ribosome
GO:0005055 IEA laminin receptor activity
GO:0005515 IPI protein binding
GO:0005622 IEA intracellular
GO:0005634 TAS nucleus
GO:0005737 TAS cytoplasm
GO:0005829 TAS cytosol
GO:0005840 IEA ribosome
GO:0005886 IDA plasma membrane
GO:0006407 IBA rRNA export from nucleus
GO:0006412 IEA:IBA translation
GO:0006413 TAS translational initiation
GO:0006414 TAS translational elongation
GO:0006415 TAS translational termination
GO:0006614 TAS SRP-dependent cotranslational protein targeting to membrane
GO:0007155 IEA cell adhesion
GO:0010467 TAS gene expression
GO:0015935 IEA small ribosomal subunit
GO:0016020 IDA membrane
GO:0016032 TAS viral process
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0019058 TAS viral life cycle
GO:0019083 TAS viral transcription
GO:0022627 IDA cytosolic small ribosomal subunit
GO:0030686 IBA 90S preribosome
GO:0043022 IPI ribosome binding
GO:0043236 IEA laminin binding
GO:0044267 TAS cellular protein metabolic process
GO:0044822 IDA poly(A) RNA binding
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000019181 rpsa ribosomal protein SA protein_coding Danio_rerio
ENSMUSG00000032518 Rpsa ribosomal protein SA protein_coding Mus_musculus
ENSMUSG00000047676 Rpsa-ps10 ribosomal protein SA, pseudogene 10 protein_coding Mus_musculus

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