C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ribosomal protein SA pseudogene 58
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000205246 RPSAP58 9606 + 19:23763005-23828135 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000354585 RPSAP58-201 23827127-23828115 protein_coding
  ENST00000462186 RPSAP58-003 23782081-23809515 processed_transcript
  ENST00000486528 RPSAP58-005 23763005-23827380 protein_coding
  ENST00000496398 RPSAP58-001 23763014-23828135 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000354585ENST00000462186ENST00000486528ENST00000496398
Transcript ID Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000354585 N/A N/A N/A N/A N/A N/A N/A N/A 0.618±0.00 1.497±0.78 1.450±0.00 N/A
ENST00000462186 1.329±0.00 N/A N/A 2.723±2.62 N/A 0.533±0.00 N/A N/A N/A 0.211±0.00 0.160±0.00 0.352±0.02
ENST00000486528 4.371±0.00 N/A 33.570±0.00 33.633±0.00 5.356±0.00 13.587±0.00 34.176±0.00 12.566±0.00 N/A 11.096±7.02 9.605±4.05 0.984±0.00
ENST00000496398 N/A 2.178±0.00 N/A 0.378±0.00 N/A N/A N/A 2.883±0.00 0.042±0.00 0.709±0.08 0.445±0.00 N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000028 IBA ribosomal small subunit assembly
GO:0000447 IBA endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000461 IBA endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0003735 IBA:IEA structural constituent of ribosome
GO:0005055 IEA laminin receptor activity
GO:0005622 IEA intracellular
GO:0005634 IEA nucleus
GO:0005840 IEA ribosome
GO:0005886 IEA plasma membrane
GO:0006407 IBA rRNA export from nucleus
GO:0006412 IBA:IEA translation
GO:0007155 IEA cell adhesion
GO:0015935 IEA small ribosomal subunit
GO:0022627 IBA cytosolic small ribosomal subunit
GO:0030686 IBA 90S preribosome
GO:0043236 IEA laminin binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000019181 rpsa ribosomal protein SA protein_coding Danio_rerio
ENSMUSG00000032518 Rpsa ribosomal protein SA protein_coding Mus_musculus
ENSMUSG00000047676 Rpsa-ps10 ribosomal protein SA, pseudogene 10 protein_coding Mus_musculus

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