C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ribosomal protein SA
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000032518 Rpsa 10090 + 9:120127766-120132369 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000035105 Rpsa-201 120127766-120132369 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000035105
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000035105 174.054±91.69 439.719±170.89 56.566±0.32 62.710±30.83 602.990±275.09 567.830±151.96 126.575±104.22 161.361±87.41 184.386±98.26 283.208±128.82 95.378±56.03 526.037±360.72 126.027±108.97 39.253±35.20

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000146 CIL_000146_0002 CGP 9:120110374-120132369
CIL_00013R CIL_00013R_0002 CGP 9:120127766-120181484

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000028 IBA ribosomal small subunit assembly
GO:0000447 IBA endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000461 IBA endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0003735 IBA structural constituent of ribosome
GO:0005055 IEA laminin receptor activity
GO:0005634 IDA nucleus
GO:0005737 ISS cytoplasm
GO:0005886 ISS plasma membrane
GO:0006407 IBA rRNA export from nucleus
GO:0006412 IBA translation
GO:0007155 IEA cell adhesion
GO:0015935 IDA small ribosomal subunit
GO:0016020 ISO membrane
GO:0022627 IBA cytosolic small ribosomal subunit
GO:0030686 IBA 90S preribosome
GO:0043236 IDA laminin binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000019181 rpsa ribosomal protein SA protein_coding Danio_rerio
ENSG00000168028 RPSA ribosomal protein SA protein_coding Homo_sapiens
ENSG00000205246 RPSAP58 ribosomal protein SA pseudogene 58 protein_coding Homo_sapiens

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