C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein SA
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000135945 rpsa-001 ENSDARG00000019181 7955 - 6:7628873-7637147 protein_coding

Danio rerio EnsemblZv9

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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000135945
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000135945 62.396±69.58 247.087±373.26 43.660±61.39 406.918±0.00 318.003±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000028 IBA ribosomal small subunit assembly
GO:0000447 IBA endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000461 IBA endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0003735 IEA structural constituent of ribosome
GO:0005055 IEA laminin receptor activity
GO:0005622 IEA intracellular
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0005840 IEA ribosome
GO:0005886 IEA plasma membrane
GO:0006407 IBA rRNA export from nucleus
GO:0006412 IEA translation
GO:0007155 IEA cell adhesion
GO:0015935 IEA small ribosomal subunit
GO:0016020 IEA membrane
GO:0022627 IBA cytosolic small ribosomal subunit
GO:0030529 IEA ribonucleoprotein complex
GO:0030686 IBA 90S preribosome
GO:0043236 IEA laminin binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000035105 Rpsa-201 protein_coding Mus_musculus 0 704
ENSMUST00000057740 Rpsa-ps10-201 protein_coding Mus_musculus 0 693
ENSMUST00000059546 Rpsa-ps2-201 processed_pseudogene Mus_musculus 0 390
ENSMUST00000117607 Gm9095-001 processed_pseudogene Mus_musculus 0 416
ENSMUST00000120423 Gm9083-001 processed_pseudogene Mus_musculus 0 564
ENSMUST00000120514 Gm9097-001 processed_pseudogene Mus_musculus 0 416
ENSMUST00000120702 Rpsa-ps9-001 processed_pseudogene Mus_musculus 0 651
ENSMUST00000121691 Rpsa-ps4-001 processed_pseudogene Mus_musculus 0 675
ENSMUST00000186198 RP23-2I19.1-001 processed_pseudogene Mus_musculus 0 444
ENSMUST00000191040 Rpsa-ps1-001 processed_pseudogene Mus_musculus 0 619
ENST00000301821 RPSA-001 protein_coding Homo_sapiens 0 664
ENST00000354585 RPSAP58-201 protein_coding Homo_sapiens 0 664
ENST00000418207 RPSAP9-001 processed_pseudogene Homo_sapiens 0 586
ENST00000427417 COMMD1-005 protein_coding Homo_sapiens 0 414
ENST00000429143 RPSAP14-001 processed_pseudogene Homo_sapiens 0 294
ENST00000429844 RPSAP8-001 processed_pseudogene Homo_sapiens 0 560
ENST00000431241 RP11-556K13.1-001 processed_pseudogene Homo_sapiens 0 608
ENST00000435879 RP11-254B13.1-001 processed_pseudogene Homo_sapiens 0 614
ENST00000442699 AC018462.3-001 processed_pseudogene Homo_sapiens 0 564
ENST00000443003 RPSA-002 protein_coding Homo_sapiens 0 601
ENST00000443010 AC097639.8-001 processed_pseudogene Homo_sapiens 0 590
ENST00000444166 COMMD1-008 protein_coding Homo_sapiens 0 416
ENST00000444599 RP11-366O20.5-001 processed_pseudogene Homo_sapiens 0 507
ENST00000445182 RP11-350G13.1-001 processed_pseudogene Homo_sapiens 0 501
ENST00000448168 RPSAP15-001 processed_pseudogene Homo_sapiens 0 592
ENST00000454001 RPSAP54-001 processed_pseudogene Homo_sapiens 0 617
ENST00000458337 COMMD1-006 protein_coding Homo_sapiens 0 414
ENST00000458478 RPSA-008 protein_coding Homo_sapiens 0 664
ENST00000465940 RP11-58H15.1-001 transcribed_processed_pseudogene Homo_sapiens 0 438
ENST00000477347 RPSAP55-001 processed_pseudogene Homo_sapiens 0 433
ENST00000478027 RPSA-003 processed_transcript Homo_sapiens 0 542
ENST00000479228 RPSAP47-001 processed_pseudogene Homo_sapiens 0 608
ENST00000483479 RP11-179A18.1-001 processed_pseudogene Homo_sapiens 0 523
ENST00000484897 RPSAP56-001 processed_pseudogene Homo_sapiens 0 531
ENST00000494591 RP11-58H15.1-002 processed_transcript Homo_sapiens 0 446
ENST00000495394 RPSA-004 retained_intron Homo_sapiens 0 265
ENST00000496398 RPSAP58-001 protein_coding Homo_sapiens 0 664

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