C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: sphingomyelin phosphodiesterase 4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSDARG00000020730 smpd4 7955 + 21:17722272-17742012 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSDART00000017937 smpd4-201 17722272-17740898 protein_coding
  ENSDART00000130519 smpd4-001 17722272-17740899 protein_coding
  ENSDART00000133396 smpd4-005 17735531-17736526 retained_intron
  ENSDART00000137143 smpd4-002 17722324-17724566 protein_coding
  ENSDART00000141659 smpd4-006 17738260-17742012 processed_transcript
  ENSDART00000144131 smpd4-004 17733340-17737933 retained_intron
  ENSDART00000147567 smpd4-003 17725614-17738081 protein_coding

Danio rerio EnsemblZv9

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Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000017937ENSDART00000130519ENSDART00000133396
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000017937 0.511±0.04 N/A N/A N/A N/A
ENSDART00000130519 2.103±1.51 1.425±0.00 1.139±0.28 0.498±0.00 1.224±0.00
ENSDART00000133396 0.960±0.00 N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004H9 CIL_0004H9_0001 CGP 21:17722272-17744520

Gene Ontology
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000136699 SMPD4 sphingomyelin phosphodiesterase 4, neutral membrane (neutral sphingomyelinase-3) protein_coding Homo_sapiens
ENSMUSG00000005899 Smpd4 sphingomyelin phosphodiesterase 4 protein_coding Mus_musculus

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