C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sphingomyelin phosphodiesterase 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000133396 smpd4-005 ENSDARG00000020730 7955 + 21:17735531-17736526 retained_intron

Danio rerio EnsemblZv9

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainENSDART00000133396
Transcript ID Brain
ENSDART00000133396 0.960±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004H9 CIL_0004H9_0001 CGP 21:17722272-17744520

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000006053 Smpd4-001 protein_coding Mus_musculus 2e-35 156
ENSMUST00000090159 Smpd4-004 protein_coding Mus_musculus 2e-36 159
ENSMUST00000163476 Smpd4-002 protein_coding Mus_musculus 2e-36 159
ENSMUST00000163997 Smpd4-011 protein_coding Mus_musculus 6e-37 159
ENSMUST00000164292 Smpd4-022 retained_intron Mus_musculus 3e-37 159
ENSMUST00000165363 Smpd4-003 protein_coding Mus_musculus 1e-36 159
ENSMUST00000166091 Smpd4-005 retained_intron Mus_musculus 9e-37 159
ENSMUST00000167592 Smpd4-020 retained_intron Mus_musculus 4e-21 106
ENSMUST00000170117 Smpd4-012 nonsense_mediated_decay Mus_musculus 1e-35 156
ENSMUST00000170273 Smpd4-014 protein_coding Mus_musculus 8e-37 159
ENSMUST00000170366 Smpd4-009 protein_coding Mus_musculus 8e-37 159
ENSMUST00000170401 Smpd4-006 retained_intron Mus_musculus 2e-36 159
ENSMUST00000170996 Smpd4-007 protein_coding Mus_musculus 1e-18 99

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