C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: cadherin 1, epithelial
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSDARG00000024371 cdh1 7955 + 7:56206925-56228078 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSDART00000097719 cdh1-201 56206925-56228078 protein_coding
  ENSDART00000147057 cdh1-001 56206925-56227011 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000097719ENSDART00000147057
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000097719 1.595±1.32 4.083±1.76 24.515±10.77 2.880±0.00 2.118±0.00
ENSDART00000147057 0.031±0.00 N/A 14.827±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004Y9 CIL_0004Y9_0002 CGP 7:56111868-56228078

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001702 IMP gastrulation with mouth forming second
GO:0001764 IMP neuron migration
GO:0001841 IMP neural tube formation
GO:0001965 IPI G-protein alpha-subunit binding
GO:0003370 IMP cell-cell adhesion involved in mesendodermal cell migration
GO:0005509 IEA calcium ion binding
GO:0005886 IEA plasma membrane
GO:0005902 IDA microvillus
GO:0005913 IDA cell-cell adherens junction
GO:0005938 IDA cell cortex
GO:0007155 IEA cell adhesion
GO:0007156 IEA homophilic cell adhesion
GO:0007398 IMP ectoderm development
GO:0008354 IMP germ cell migration
GO:0016020 IEA membrane
GO:0016021 ISS integral to membrane
GO:0016337 IMP cell-cell adhesion
GO:0016342 IDA catenin complex
GO:0034334 IMP adherens junction maintenance
GO:0042074 IMP cell migration involved in gastrulation
GO:0055113 IGI epiboly involved in gastrulation with mouth forming second
GO:0070586 IMP cell-cell adhesion involved in gastrulation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000039068 CDH1 cadherin 1, type 1, E-cadherin (epithelial) protein_coding Homo_sapiens
ENSG00000062038 CDH3 cadherin 3, type 1, P-cadherin (placental) protein_coding Homo_sapiens
ENSMUSG00000000303 Cdh1 cadherin 1 protein_coding Mus_musculus
ENSMUSG00000061048 Cdh3 cadherin 3 protein_coding Mus_musculus

Loading