C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: small nuclear ribonucleoprotein polypeptide A'
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSDARG00000024651 snrpa1 7955 + 7:10071551-10086203 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSDART00000102584 snrpa1-001 10071587-10086203 nonsense_mediated_decay
  ENSDART00000128530 snrpa1-002 10071551-10086201 protein_coding
  ENSDART00000148818 snrpa1-003 10080262-10086203 retained_intron
  ENSDART00000149146 snrpa1-004 10083232-10086151 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000102584ENSDART00000128530ENSDART00000148818ENSDART00000149146
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000102584 N/A 7.182±0.00 17.628±0.00 N/A 2.791±0.00
ENSDART00000128530 8.821±1.17 8.428±2.82 16.133±0.00 4.201±0.00 4.967±0.00
ENSDART00000148818 6.230±1.79 N/A N/A 1.155±0.00 N/A
ENSDART00000149146 11.969±4.29 5.570±0.65 4.297±0.51 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007CP CIL_0007CP_0001 CGP 7:9933638-10086203
CIL_0007CO CIL_0007CO_0001 CGP 7:10071551-10103115

Gene Ontology
GO IDEvidence TypeGO Description
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000131876 SNRPA1 small nuclear ribonucleoprotein polypeptide A' protein_coding Homo_sapiens
ENSMUSG00000030512 Snrpa1 small nuclear ribonucleoprotein polypeptide A' protein_coding Mus_musculus

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