C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0007CP_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000090857-ENSDARG00000024651 CGP 7955 7:9933638-10086203
GeneTranscriptPositionBiotype
ENSDARG00000024651 (snrpa1)
small nuclear ribonucleoprotein polypeptide A' 		ENSDART00000102584 (snrpa1-001) 10071587-10086203 nonsense_mediated_decay
ENSDART00000128530 (snrpa1-002) 10071551-10086201 protein_coding
ENSDART00000148818 (snrpa1-003) 10080262-10086203 retained_intron
ENSDART00000149146 (snrpa1-004) 10083232-10086151 retained_intron
ENSDARG00000090857 (PCSK6)
proprotein convertase subtilisin/kexin type 6 		ENSDART00000131198 (PCSK6-201) 9933638-10053939 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_0007CP_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000030513-ENSMUSG00000030512 CGP 10090 7:65861734-66074582
GeneTranscriptPositionBiotype
ENSMUSG00000030512 (Snrpa1)
small nuclear ribonucleoprotein polypeptide A' 		ENSMUST00000032723 (Snrpa1-002) 66060544-66074580 nonsense_mediated_decay
ENSMUST00000123157 (Snrpa1-004) 66060299-66069526 processed_transcript
ENSMUST00000138271 (Snrpa1-005) 66060781-66062170 processed_transcript
ENSMUST00000139082 (Snrpa1-003) 66060564-66071612 retained_intron
ENSMUST00000147702 (Snrpa1-006) 66068852-66069523 retained_intron
ENSMUST00000153609 (Snrpa1-001) 66060338-66074582 protein_coding
ENSMUSG00000030513 (Pcsk6)
proprotein convertase subtilisin/kexin type 6 		ENSMUST00000055576 (Pcsk6-001) 65862029-66050335 protein_coding
ENSMUST00000098391 (Pcsk6-002) 65862136-66050334 protein_coding
ENSMUST00000176199 (Pcsk6-004) 65861734-65952984 protein_coding
ENSMUST00000176209 (Pcsk6-003) 65862432-66050340 protein_coding
ENSMUST00000177272 (Pcsk6-006) 66038418-66043528 retained_intron
ENSMUST00000177369 (Pcsk6-005) 65953012-65963193 retained_intron
ENSMUSG00000093405 (Gm20684)
predicted gene 20684 		ENSMUST00000176744 (Gm20684-001) 65861006-65861992 processed_transcript

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007CP_0001ENSDARG00000024651ENSDART00000102584ENSDART00000128530ENSDART00000148818ENSDART00000149146ENSDARG00000090857ENSDART00000131198CIL_0007CP_0002ENSMUSG00000030512ENSMUST00000032723ENSMUST00000123157ENSMUST00000138271ENSMUST00000139082ENSMUST00000147702ENSMUST00000153609ENSMUSG00000030513ENSMUST00000055576ENSMUST00000098391ENSMUST00000176199ENSMUST00000176209ENSMUST00000177272ENSMUST00000177369ENSMUSG00000093405ENSMUST00000176744
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007CP_0001ENSDARG00000024651ENSDART00000102584ENSDART00000128530ENSDART00000148818ENSDART00000149146ENSDARG00000090857ENSDART00000131198CIL_0007CP_0002ENSMUSG00000030512ENSMUST00000032723ENSMUST00000123157ENSMUST00000138271ENSMUST00000139082ENSMUST00000153609ENSMUSG00000030513ENSMUST00000055576ENSMUST00000098391ENSMUST00000176209ENSMUSG00000093405ENSMUST00000176744
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000024651 ENSDART00000102584 N/A N/A N/A N/A N/A N/A 7.182±0.00 17.628±0.00 N/A N/A 2.791±0.00 N/A N/A N/A
ENSDART00000128530 N/A N/A N/A 8.821±1.17 N/A N/A 8.428±2.82 16.133±0.00 4.201±0.00 N/A 4.967±0.00 N/A N/A N/A
ENSDART00000148818 N/A N/A N/A 6.230±1.79 N/A N/A N/A N/A 1.155±0.00 N/A N/A N/A N/A N/A
ENSDART00000149146 N/A N/A N/A 11.969±4.29 N/A N/A 5.570±0.65 4.297±0.51 N/A N/A N/A N/A N/A N/A
ENSDARG00000090857 ENSDART00000131198 N/A N/A N/A 1.984±0.00 N/A N/A 2.260±1.04 N/A 0.413±0.00 N/A 0.845±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000030512 ENSMUST00000032723 2.996±0.67 4.931±1.79 3.148±0.00 7.259±2.20 2.336±0.95 4.325±1.60 3.078±0.54 3.502±1.08 6.065±3.37 4.066±1.13 1.427±0.30 4.259±1.35 4.595±0.00 8.775±1.27
ENSMUST00000123157 N/A N/A N/A N/A 4.695±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000138271 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 18.044±0.00
ENSMUST00000139082 1.026±0.45 0.446±0.00 1.114±0.00 3.287±1.01 0.810±0.20 0.566±0.00 0.624±0.06 0.468±0.01 3.256±0.81 0.863±0.22 0.649±0.08 1.305±0.82 1.150±0.00 1.196±0.13
ENSMUST00000147702 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000153609 2.981±0.95 1.270±0.27 10.898±0.67 17.388±3.82 2.418±0.72 2.162±0.57 3.430±0.54 3.015±0.80 16.569±15.94 2.565±1.05 5.664±0.76 7.999±13.69 45.762±37.13 4.406±1.47
ENSMUSG00000030513 ENSMUST00000055576 9.980±5.24 0.727±0.00 N/A 1.384±1.54 4.059±2.46 N/A 5.530±1.30 4.709±1.48 2.344±1.59 0.663±0.07 0.518±0.01 2.680±0.82 6.534±5.13 0.345±0.00
ENSMUST00000098391 6.510±2.65 4.034±0.81 1.586±0.32 1.038±0.16 8.948±2.85 6.482±0.62 7.443±1.62 4.752±2.39 7.276±5.88 3.509±0.70 0.934±0.25 9.915±2.28 2.782±1.25 0.956±0.29
ENSMUST00000176199 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000176209 N/A 1.137±0.52 0.742±0.07 0.652±0.01 5.924±0.00 1.910±0.65 N/A 2.995±1.07 6.015±4.01 N/A 1.193±0.57 4.782±4.19 3.666±4.21 0.077±0.00
ENSMUST00000177272 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000177369 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000093405 ENSMUST00000176744 0.219±0.05 0.263±0.10 0.197±0.11 0.484±0.43 0.190±0.05 0.474±0.32 0.125±0.00 0.286±0.12 1.137±0.65 0.283±0.13 0.246±0.08 0.611±0.33 0.354±0.18 N/A

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