C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: small nuclear ribonucleoprotein polypeptide A'
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000030512 Snrpa1 10090 + 7:66060299-66074582 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000032723 Snrpa1-002 66060544-66074580 nonsense_mediated_decay
  ENSMUST00000123157 Snrpa1-004 66060299-66069526 processed_transcript
  ENSMUST00000138271 Snrpa1-005 66060781-66062170 processed_transcript
  ENSMUST00000139082 Snrpa1-003 66060564-66071612 retained_intron
  ENSMUST00000147702 Snrpa1-006 66068852-66069523 retained_intron
  ENSMUST00000153609 Snrpa1-001 66060338-66074582 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000032723ENSMUST00000123157ENSMUST00000138271ENSMUST00000139082ENSMUST00000153609
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000032723 2.996±0.67 4.931±1.79 3.148±0.00 7.259±2.20 2.336±0.95 4.325±1.60 3.078±0.54 3.502±1.08 6.065±3.37 4.066±1.13 1.427±0.30 4.259±1.35 4.595±0.00 8.775±1.27
ENSMUST00000123157 N/A N/A N/A N/A 4.695±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000138271 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 18.044±0.00
ENSMUST00000139082 1.026±0.45 0.446±0.00 1.114±0.00 3.287±1.01 0.810±0.20 0.566±0.00 0.624±0.06 0.468±0.01 3.256±0.81 0.863±0.22 0.649±0.08 1.305±0.82 1.150±0.00 1.196±0.13
ENSMUST00000153609 2.981±0.95 1.270±0.27 10.898±0.67 17.388±3.82 2.418±0.72 2.162±0.57 3.430±0.54 3.015±0.80 16.569±15.94 2.565±1.05 5.664±0.76 7.999±13.69 45.762±37.13 4.406±1.47

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007CP CIL_0007CP_0002 CGP 7:65861734-66074582
CIL_0007CO CIL_0007CO_0002 CGP 7:66060299-66089412

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005681 IEA spliceosomal complex
GO:0006397 IEA mRNA processing
GO:0008380 IEA RNA splicing
GO:0019013 IEA viral nucleocapsid
GO:0030529 IEA ribonucleoprotein complex
GO:0044822 IEA poly(A) RNA binding
GO:0071013 IEA catalytic step 2 spliceosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000024651 snrpa1 small nuclear ribonucleoprotein polypeptide A' protein_coding Danio_rerio
ENSG00000131876 SNRPA1 small nuclear ribonucleoprotein polypeptide A' protein_coding Homo_sapiens

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