C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: small nuclear ribonucleoprotein polypeptide A'
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000131876 SNRPA1 9606 - 15:101281510-101295282 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000254193 SNRPA1-001 101281510-101295251 protein_coding
  ENST00000394082 SNRPA1-004 101281654-101295203 processed_transcript
  ENST00000540017 SNRPA1-003 101281709-101295255 processed_transcript
  ENST00000558020 SNRPA1-009 101288082-101295211 processed_transcript
  ENST00000558036 SNRPA1-002 101281514-101295282 retained_intron
  ENST00000558059 SNRPA1-008 101286690-101294930 retained_intron
  ENST00000559309 SNRPA1-015 101281514-101295204 nonsense_mediated_decay
  ENST00000559686 SNRPA1-013 101284736-101287696 protein_coding
  ENST00000560307 SNRPA1-014 101281514-101285130 retained_intron
  ENST00000560383 SNRPA1-007 101286610-101295213 retained_intron
  ENST00000560433 SNRPA1-005 101281515-101288448 retained_intron
  ENST00000560496 SNRPA1-011 101281745-101294905 protein_coding
  ENST00000560856 SNRPA1-012 101286932-101295222 processed_transcript
  ENST00000560987 SNRPA1-010 101286921-101294961 processed_transcript
  ENST00000561187 SNRPA1-006 101292839-101295271 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000254193ENST00000394082ENST00000540017ENST00000558036ENST00000559309ENST00000560307ENST00000560433ENST00000560496ENST00000561187
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000254193 7.409±0.00 19.372±0.00 N/A 2.748±1.32 3.690±0.00 3.801±2.34 3.168±3.03 8.625±0.00 6.133±0.00 11.619±0.00 4.746±0.00 15.439±6.34 16.780±3.84 15.009±0.52
ENST00000394082 N/A N/A N/A 2.779±0.00 2.886±0.00 4.853±0.00 0.507±0.00 5.459±1.16 3.493±1.87 N/A N/A N/A N/A N/A
ENST00000540017 N/A N/A 2.145±0.00 N/A N/A N/A N/A N/A N/A N/A 1.052±0.00 3.520±0.00 N/A N/A
ENST00000558036 0.935±0.00 6.625±0.00 N/A 2.503±0.00 0.750±0.00 N/A N/A 0.845±0.00 0.654±0.04 0.428±0.00 N/A 1.793±0.76 N/A N/A
ENST00000559309 N/A N/A N/A 1.673±0.00 N/A 2.468±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000560307 N/A N/A 1.310±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000560433 N/A 2.764±0.00 N/A 1.275±0.00 0.580±0.00 0.584±0.00 0.323±0.25 N/A N/A 1.854±0.00 N/A 1.322±0.47 N/A N/A
ENST00000560496 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.924±0.00 N/A 27.529±23.56 22.927±0.00 58.665±0.00
ENST00000561187 N/A N/A N/A N/A N/A N/A N/A 1.586±0.00 N/A N/A N/A N/A N/A N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000398 IC mRNA splicing, via spliceosome
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005681 IDA spliceosomal complex
GO:0005686 TAS U2 snRNP
GO:0008380 TAS RNA splicing
GO:0010467 TAS gene expression
GO:0019013 IEA viral nucleocapsid
GO:0030529 IEA ribonucleoprotein complex
GO:0030532 TAS small nuclear ribonucleoprotein complex
GO:0044822 IDA poly(A) RNA binding
GO:0071013 IDA catalytic step 2 spliceosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000024651 snrpa1 small nuclear ribonucleoprotein polypeptide A' protein_coding Danio_rerio
ENSMUSG00000030512 Snrpa1 small nuclear ribonucleoprotein polypeptide A' protein_coding Mus_musculus

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