C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ATPase, Ca++ transporting, cardiac muscle, slow twitch 2a
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSDARG00000029439 atp2a2a 7955 + 8:12204786-12262526 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSDART00000042040 atp2a2a-001 12204786-12262526 protein_coding
  ENSDART00000145436 atp2a2a-002 12204789-12232814 nonsense_mediated_decay
  ENSDART00000146241 atp2a2a-003 12205118-12258010 protein_coding

Danio rerio EnsemblZv9

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Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000042040ENSDART00000146241
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000042040 4.077±0.37 612.759±455.54 6.986±0.42 1.709±0.00 89.157±0.00
ENSDART00000146241 16.067±0.00 N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001QG CIL_0001QG_0001 CGP 8:12159602-12262526
CIL_0001QF CIL_0001QF_0001 CGP 8:12204786-12287624

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0001947 IMP heart looping
GO:0005388 IEA calcium-transporting ATPase activity
GO:0005524 IEA ATP binding
GO:0006812 IEA cation transport
GO:0006816 IEA calcium ion transport
GO:0008016 IMP regulation of heart contraction
GO:0016020 IEA membrane
GO:0016021 IEA integral to membrane
GO:0016787 IEA hydrolase activity
GO:0019829 IEA cation-transporting ATPase activity
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000174437 ATP2A2 ATPase, Ca++ transporting, cardiac muscle, slow twitch 2 protein_coding Homo_sapiens
ENSMUSG00000029467 Atp2a2 ATPase, Ca++ transporting, cardiac muscle, slow twitch 2 protein_coding Mus_musculus

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