C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: netrin 1a
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000148565 ntn1a-001 ENSDARG00000033733 7955 + 6:17998946-18121555 protein_coding

Danio rerio EnsemblZv9

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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000148565
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000148565 1.418±0.11 1.872±0.68 0.363±0.10 0.152±0.00 0.332±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001LK CIL_0001LK_0001 CGP 6:17947614-18121555
CIL_0001LN CIL_0001LN_0001 CGP 6:17998946-18236139

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001525 IMP angiogenesis
GO:0001569 IMP patterning of blood vessels
GO:0005515 IEA protein binding
GO:0005576 IEA extracellular region
GO:0016358 IGI dendrite development
GO:0016525 IMP negative regulation of angiogenesis
GO:0030516 IGI regulation of axon extension
GO:0033564 IMP anterior/posterior axon guidance
GO:0048665 IMP neuron fate specification
GO:0071678 IMP olfactory bulb axon guidance

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000021284 Ntn1-201 protein_coding Mus_musculus 3e-16 94
ENSMUST00000108674 Ntn1-001 protein_coding Mus_musculus 3e-16 94
ENST00000173229 NTN1-001 protein_coding Homo_sapiens 0.000000000002 81

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