C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: jumonji domain containing 6
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSDARG00000034358 jmjd6 7955 - 3:61193462-61205542 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSDART00000012113 jmjd6-201 61193462-61205486 protein_coding
  ENSDART00000125169 jmjd6-202 61193462-61205486 protein_coding
  ENSDART00000153856 jmjd6-001 61195550-61205542 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartLiverMuscleENSDART00000012113ENSDART00000125169ENSDART00000153856
Transcript ID Brain Heart Liver Muscle
ENSDART00000012113 1.964±0.24 0.962±0.00 0.505±0.00 N/A
ENSDART00000125169 N/A N/A N/A 0.678±0.00
ENSDART00000153856 1.141±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003KF CIL_0003KF_0001 CGP 3:61193462-61208927

Gene Ontology
GO IDEvidence TypeGO Description
GO:0002040 ISS sprouting angiogenesis
GO:0003723 IEA RNA binding
GO:0003727 ISS single-stranded RNA binding
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005654 ISS nucleoplasm
GO:0005730 ISS nucleolus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-dependent
GO:0006397 IEA mRNA processing
GO:0006909 IMP phagocytosis
GO:0007275 IEA multicellular organismal development
GO:0008380 IEA RNA splicing
GO:0016491 IEA oxidoreductase activity
GO:0016568 IEA chromatin modification
GO:0018395 ISS peptidyl-lysine hydroxylation to 5-hydroxy-L-lysine
GO:0030154 IEA cell differentiation
GO:0033746 ISS histone demethylase activity (H3-R2 specific)
GO:0033749 ISS histone demethylase activity (H4-R3 specific)
GO:0046872 IEA metal ion binding
GO:0048024 ISS regulation of mRNA splicing, via spliceosome
GO:0051213 IEA dioxygenase activity
GO:0055114 ISS oxidation-reduction process
GO:0070078 ISS histone H3-R2 demethylation
GO:0070079 ISS histone H4-R3 demethylation
GO:0070815 ISS peptidyl-lysine 5-dioxygenase activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000070495 JMJD6 jumonji domain containing 6 protein_coding Homo_sapiens
ENSMUSG00000056962 Jmjd6 jumonji domain containing 6 protein_coding Mus_musculus

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