C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003KF_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000034358-ENSDARG00000096852 CGP 7955 3:61193462-61208927
GeneTranscriptPositionBiotype
ENSDARG00000034358 (jmjd6)
jumonji domain containing 6 		ENSDART00000012113 (jmjd6-201) 61193462-61205486 protein_coding
ENSDART00000125169 (jmjd6-202) 61193462-61205486 protein_coding
ENSDART00000153856 (jmjd6-001) 61195550-61205542 protein_coding
ENSDARG00000096852 (METTL23)
methyltransferase like 23 		ENSDART00000157024 (METTL23-001) 61205107-61208927 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_0003KF_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000070495-ENSG00000181038 CGP 9606 17:76712832-76733936
GeneTranscriptPositionBiotype
ENSG00000070495 (JMJD6)
jumonji domain containing 6 		ENST00000303996 (JMJD6-003) 76718446-76726784 nonsense_mediated_decay
ENST00000397625 (JMJD6-004) 76718453-76726590 protein_coding
ENST00000445478 (JMJD6-001) 76712832-76726679 protein_coding
ENST00000542934 (JMJD6-002) 76718446-76726784 nonsense_mediated_decay
ENST00000585429 (JMJD6-005) 76718500-76726503 protein_coding
ENST00000589982 (JMJD6-007) 76718672-76720637 retained_intron
ENST00000591460 (JMJD6-006) 76718453-76721382 retained_intron
ENST00000617192 (JMJD6-201) 76712832-76726799 protein_coding

Homo sapiens Ensembl (GRCh38)

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CIL_0003KF_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000056962-ENSMUSG00000090266 CGP 10090 11:116837432-116854263
GeneTranscriptPositionBiotype
ENSMUSG00000020818 (Mfsd11)
major facilitator superfamily domain containing 11 		ENSMUST00000021173 (Mfsd11-001) 116853820-116875635 protein_coding
ENSMUST00000106363 (Mfsd11-011) 116854026-116874167 nonsense_mediated_decay
ENSMUST00000106365 (Mfsd11-007) 116853895-116875457 nonsense_mediated_decay
ENSMUST00000125920 (Mfsd11-010) 116853295-116859113 retained_intron
ENSMUST00000126661 (Mfsd11-005) 116853779-116854256 retained_intron
ENSMUST00000134106 (Mfsd11-006) 116868368-116873837 processed_transcript
ENSMUST00000135135 (Mfsd11-009) 116853474-116854058 processed_transcript
ENSMUST00000136012 (Mfsd11-008) 116853762-116874719 nonsense_mediated_decay
ENSMUST00000139954 (Mfsd11-002) 116852440-116874712 nonsense_mediated_decay
ENSMUST00000147404 (Mfsd11-004) 116859141-116861669 retained_intron
ENSMUST00000151944 (Mfsd11-012) 116853829-116854716 retained_intron
ENSMUST00000153084 (Mfsd11-003) 116854078-116873945 protein_coding
ENSMUSG00000034120 (Srsf2)
serine/arginine-rich splicing factor 2 		ENSMUST00000092404 (Srsf2-001) 116849901-116853094 protein_coding
ENSMUST00000136914 (Srsf2-002) 116850044-116853072 nonsense_mediated_decay
ENSMUST00000138484 (Srsf2-004) 116849904-116852219 retained_intron
ENSMUST00000176834 (Srsf2-003) 116849906-116852086 nonsense_mediated_decay
ENSMUST00000177429 (Srsf2-005) 116850108-116851571 processed_transcript
ENSMUST00000190993 (Srsf2-201) 116850054-116853072 protein_coding
ENSMUSG00000056962 (Jmjd6)
jumonji domain containing 6 		ENSMUST00000047616 (Jmjd6-001) 116837432-116843449 protein_coding
ENSMUST00000124831 (Jmjd6-004) 116837435-116841251 protein_coding
ENSMUST00000130120 (Jmjd6-003) 116837433-116843290 retained_intron
ENSMUST00000140349 (Jmjd6-006) 116837588-116842705 nonsense_mediated_decay
ENSMUST00000140513 (Jmjd6-005) 116837613-116842720 nonsense_mediated_decay
ENSMUST00000141735 (Jmjd6-007) 116837432-116843281 retained_intron
ENSMUST00000142495 (Jmjd6-002) 116837433-116843355 nonsense_mediated_decay
ENSMUSG00000090266 (Mettl23)
methyltransferase like 23 		ENSMUST00000106370 (Mettl23-001) 116843278-116849740 protein_coding
ENSMUST00000128784 (Mettl23-002) 116843561-116846133 retained_intron
ENSMUST00000132593 (Mettl23-003) 116843675-116848355 nonsense_mediated_decay
ENSMUST00000140869 (Mettl23-004) 116843675-116849053 nonsense_mediated_decay
ENSMUST00000143184 (Mettl23-005) 116848901-116854263 protein_coding
ENSMUST00000175930 (Mettl23-006) 116843555-116850360 retained_intron
ENSMUST00000176765 (Mettl23-008) 116843585-116846055 retained_intron
ENSMUST00000176799 (Mettl23-007) 116843673-116849629 retained_intron

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003KF_0001ENSDARG00000034358ENSDART00000012113ENSDART00000125169ENSDART00000153856ENSDARG00000096852ENSDART00000157024CIL_0003KF_0002ENSG00000070495ENST00000303996ENST00000397625ENST00000445478ENST00000542934ENST00000585429ENST00000589982ENST00000591460ENST00000617192CIL_0003KF_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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003KF_0001ENSDARG00000034358ENSDART00000012113ENSDART00000125169ENSDART00000153856ENSDARG00000096852ENSDART00000157024CIL_0003KF_0002ENSG00000070495ENST00000303996ENST00000397625ENST00000445478ENST00000542934ENST00000585429ENST00000617192CIL_0003KF_0003ENSMUSG00000020818ENSMUST00000021173ENSMUST00000139954ENSMUSG00000034120ENSMUST00000092404ENSMUST00000138484ENSMUST00000190993ENSMUSG00000056962ENSMUST00000047616ENSMUSG00000090266ENSMUST00000106370
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000034358 ENSDART00000012113 N/A N/A N/A 1.964±0.24 N/A N/A 0.962±0.00 N/A 0.505±0.00 N/A N/A N/A N/A N/A
ENSDART00000125169 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.678±0.00 N/A N/A N/A
ENSDART00000153856 N/A N/A N/A 1.141±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000096852 ENSDART00000157024 N/A N/A N/A 2.933±1.17 N/A N/A 3.842±1.63 2.796±0.00 1.099±0.00 N/A 1.657±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000070495 ENST00000303996 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.531±0.00 N/A N/A N/A
ENST00000397625 8.727±0.00 7.667±0.00 0.992±0.00 4.293±2.63 3.528±2.19 13.915±12.26 4.128±3.30 6.226±4.41 3.663±0.54 40.930±0.00 4.135±1.93 11.253±5.91 13.225±1.11 15.553±0.23
ENST00000445478 0.755±0.00 N/A N/A 1.080±0.26 1.329±0.00 1.359±0.00 2.856±2.20 1.859±0.00 0.220±0.00 N/A 4.324±3.47 1.481±0.59 0.709±0.00 0.991±0.00
ENST00000542934 N/A 1.977±0.00 0.165±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000585429 N/A N/A N/A N/A 3.327±0.00 N/A N/A N/A N/A 0.730±0.00 N/A N/A N/A N/A
ENST00000589982 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000591460 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000617192 N/A N/A 0.053±0.00 0.604±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.627±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000020818 ENSMUST00000021173 N/A N/A N/A N/A 15.709±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 20.507±0.00
ENSMUST00000106363 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000106365 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000125920 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000126661 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000134106 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000135135 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000136012 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000139954 31.354±8.69 83.902±19.10 N/A N/A 51.748±21.63 95.993±36.75 15.269±1.44 30.846±6.40 17.070±4.73 40.331±10.45 N/A 101.967±42.83 35.881±10.20 45.748±21.05
ENSMUST00000147404 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000151944 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000153084 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000034120 ENSMUST00000092404 65.158±14.46 177.352±82.36 135.382±32.38 148.745±101.44 123.327±95.80 245.222±65.97 40.105±3.87 46.571±7.16 137.962±102.71 138.774±35.16 33.753±1.85 207.157±137.00 101.425±60.10 66.360±7.41
ENSMUST00000136914 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000138484 N/A N/A 80.758±16.88 53.211±29.42 31.882±0.00 N/A N/A N/A 61.743±6.30 N/A 19.482±0.92 53.629±13.04 39.599±12.26 3.883±0.00
ENSMUST00000176834 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000177429 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000190993 139.924±37.25 323.864±142.37 N/A N/A 180.248±73.57 125.186±10.39 46.645±16.73 67.703±25.32 35.351±12.99 92.675±26.30 N/A 79.223±14.42 N/A 62.193±6.02
ENSMUSG00000056962 ENSMUST00000047616 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 54.793±0.00 30.558±0.00
ENSMUST00000124831 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000130120 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000140349 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000140513 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000141735 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000142495 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000090266 ENSMUST00000106370 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 35.557±1.58 N/A N/A N/A
ENSMUST00000128784 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000132593 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000140869 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000143184 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000175930 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000176765 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000176799 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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