C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: jumonji domain containing 6
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000070495 JMJD6 9606 - 17:76712832-76726799 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000303996 JMJD6-003 76718446-76726784 nonsense_mediated_decay
  ENST00000397625 JMJD6-004 76718453-76726590 protein_coding
  ENST00000445478 JMJD6-001 76712832-76726679 protein_coding
  ENST00000542934 JMJD6-002 76718446-76726784 nonsense_mediated_decay
  ENST00000585429 JMJD6-005 76718500-76726503 protein_coding
  ENST00000589982 JMJD6-007 76718672-76720637 retained_intron
  ENST00000591460 JMJD6-006 76718453-76721382 retained_intron
  ENST00000617192 JMJD6-201 76712832-76726799 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000303996ENST00000397625ENST00000445478ENST00000542934ENST00000585429ENST00000617192
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000303996 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.531±0.00 N/A N/A N/A
ENST00000397625 8.727±0.00 7.667±0.00 0.992±0.00 4.293±2.63 3.528±2.19 13.915±12.26 4.128±3.30 6.226±4.41 3.663±0.54 40.930±0.00 4.135±1.93 11.253±5.91 13.225±1.11 15.553±0.23
ENST00000445478 0.755±0.00 N/A N/A 1.080±0.26 1.329±0.00 1.359±0.00 2.856±2.20 1.859±0.00 0.220±0.00 N/A 4.324±3.47 1.481±0.59 0.709±0.00 0.991±0.00
ENST00000542934 N/A 1.977±0.00 0.165±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000585429 N/A N/A N/A N/A 3.327±0.00 N/A N/A N/A N/A 0.730±0.00 N/A N/A N/A N/A
ENST00000617192 N/A N/A 0.053±0.00 0.604±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.627±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000FJ CIL_0000FJ_0001 CGP 17:76672551-76726799
CIL_0003KF CIL_0003KF_0002 CGP 17:76712832-76733936

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001568 IEA blood vessel development
GO:0001822 IEA kidney development
GO:0002040 ISS sprouting angiogenesis
GO:0003723 TAS RNA binding
GO:0003727 IDA single-stranded RNA binding
GO:0004872 IEA receptor activity
GO:0005506 IDA iron ion binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 IDA nucleoplasm
GO:0005730 IDA nucleolus
GO:0005886 IEA plasma membrane
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006397 IEA mRNA processing
GO:0007166 IEA cell surface receptor signaling pathway
GO:0007507 IEA heart development
GO:0008380 IEA RNA splicing
GO:0018395 IDA peptidyl-lysine hydroxylation to 5-hydroxy-L-lysine
GO:0030324 IEA lung development
GO:0033077 IEA T cell differentiation in thymus
GO:0033746 IDA histone demethylase activity (H3-R2 specific)
GO:0033749 IDA histone demethylase activity (H4-R3 specific)
GO:0042116 IEA macrophage activation
GO:0042802 IDA identical protein binding
GO:0043277 IEA apoptotic cell clearance
GO:0043654 IEA recognition of apoptotic cell
GO:0048024 IMP regulation of mRNA splicing, via spliceosome
GO:0048821 IEA erythrocyte development
GO:0055114 IEA oxidation-reduction process
GO:0060041 IEA retina development in camera-type eye
GO:0070078 IDA histone H3-R2 demethylation
GO:0070079 IDA histone H4-R3 demethylation
GO:0070815 IDA peptidyl-lysine 5-dioxygenase activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000034358 jmjd6 jumonji domain containing 6 protein_coding Danio_rerio
ENSMUSG00000056962 Jmjd6 jumonji domain containing 6 protein_coding Mus_musculus

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