C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: jumonji domain containing 6
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000056962 Jmjd6 10090 - 11:116837432-116843449 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000047616 Jmjd6-001 116837432-116843449 protein_coding
  ENSMUST00000124831 Jmjd6-004 116837435-116841251 protein_coding
  ENSMUST00000130120 Jmjd6-003 116837433-116843290 retained_intron
  ENSMUST00000140349 Jmjd6-006 116837588-116842705 nonsense_mediated_decay
  ENSMUST00000140513 Jmjd6-005 116837613-116842720 nonsense_mediated_decay
  ENSMUST00000141735 Jmjd6-007 116837432-116843281 retained_intron
  ENSMUST00000142495 Jmjd6-002 116837433-116843355 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; PlacentaTestisENSMUST00000047616
Transcript ID Placenta Testis
ENSMUST00000047616 54.793±0.00 30.558±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000FJ CIL_0000FJ_0002 CGP 11:116803062-116843449
CIL_0003KF CIL_0003KF_0003 CGP 11:116837432-116854263

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001568 IMP blood vessel development
GO:0001822 IMP kidney development
GO:0002040 IMP sprouting angiogenesis
GO:0003727 ISS single-stranded RNA binding
GO:0004872 IDA receptor activity
GO:0005506 IEA iron ion binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 ISS nucleoplasm
GO:0005730 ISS nucleolus
GO:0005886 IDA plasma membrane
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006397 IEA mRNA processing
GO:0007166 IDA cell surface receptor signaling pathway
GO:0007507 IMP heart development
GO:0008380 IEA RNA splicing
GO:0018395 ISS peptidyl-lysine hydroxylation to 5-hydroxy-L-lysine
GO:0030324 IMP lung development
GO:0033077 IMP T cell differentiation in thymus
GO:0033746 ISS histone demethylase activity (H3-R2 specific)
GO:0033749 ISS histone demethylase activity (H4-R3 specific)
GO:0042116 IMP macrophage activation
GO:0042802 IEA identical protein binding
GO:0043277 IMP apoptotic cell clearance
GO:0043654 IDA recognition of apoptotic cell
GO:0048024 IMP regulation of mRNA splicing, via spliceosome
GO:0048821 IMP erythrocyte development
GO:0055114 IEA oxidation-reduction process
GO:0060041 IMP retina development in camera-type eye
GO:0070078 IEA histone H3-R2 demethylation
GO:0070079 IEA histone H4-R3 demethylation
GO:0070815 ISS peptidyl-lysine 5-dioxygenase activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000034358 jmjd6 jumonji domain containing 6 protein_coding Danio_rerio
ENSG00000070495 JMJD6 jumonji domain containing 6 protein_coding Homo_sapiens

Loading