C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: structural maintenance of chromosomes 4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSDARG00000038882 smc4 7955 + 15:1529850-1568335 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSDART00000056765 smc4-201 1529851-1568333 protein_coding
  ENSDART00000130413 smc4-001 1529850-1568335 protein_coding
  ENSDART00000133909 smc4-002 1555871-1563548 processed_transcript

Danio rerio EnsemblZv9

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000056765ENSDART00000130413ENSDART00000133909
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000056765 0.198±0.00 0.299±0.00 N/A N/A 0.257±0.00
ENSDART00000130413 0.367±0.35 0.738±0.00 13.128±0.00 0.404±0.00 0.125±0.00
ENSDART00000133909 0.222±0.00 N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004JR CIL_0004JR_0001 CGP 15:1489699-1568335
CIL_0004JQ CIL_0004JQ_0001 CGP 15:1529850-1579343

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004888 IEA transmembrane signaling receptor activity
GO:0005515 IEA protein binding
GO:0005524 IEA ATP binding
GO:0005634 IEA nucleus
GO:0005694 IEA chromosome
GO:0006281 IEA DNA repair
GO:0006310 IEA DNA recombination
GO:0006935 IEA chemotaxis
GO:0007165 IEA signal transduction
GO:0016020 IEA membrane
GO:0051276 IEA chromosome organization

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000113810 SMC4 structural maintenance of chromosomes 4 protein_coding Homo_sapiens
ENSMUSG00000034349 Smc4 structural maintenance of chromosomes 4 protein_coding Mus_musculus

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