C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0004JR_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000038879-ENSDARG00000038882 CGP 7955 15:1489699-1568335
GeneTranscriptPositionBiotype
ENSDARG00000038879 (ift80)
intraflagellar transport 80 homolog (Chlamydomonas) 		ENSDART00000056763 (ift80-201) 1489703-1529438 protein_coding
ENSDART00000133943 (ift80-001) 1489699-1529464 protein_coding
ENSDART00000142319 (ift80-002) 1518678-1529425 retained_intron
ENSDARG00000038882 (smc4)
structural maintenance of chromosomes 4 		ENSDART00000056765 (smc4-201) 1529851-1568333 protein_coding
ENSDART00000130413 (smc4-001) 1529850-1568335 protein_coding
ENSDART00000133909 (smc4-002) 1555871-1563548 processed_transcript

Danio rerio Ensembl (Zv9)

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CIL_0004JR_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000068885-ENSG00000113810 CGP 9606 3:160256986-160434962
GeneTranscriptPositionBiotype
ENSG00000068885 (IFT80)
intraflagellar transport 80 		ENST00000326448 (IFT80-001) 160256986-160399532 protein_coding
ENST00000461213 (IFT80-025) 160303944-160320147 retained_intron
ENST00000463240 (IFT80-027) 160258419-160277478 processed_transcript
ENST00000465537 (IFT80-022) 160356013-160399207 protein_coding
ENST00000465972 (IFT80-018) 160377436-160399216 processed_transcript
ENST00000466326 (IFT80-006) 160384601-160399880 processed_transcript
ENST00000467254 (IFT80-011) 160383985-160399247 retained_intron
ENST00000468218 (IFT80-015) 160366055-160399223 protein_coding
ENST00000468327 (IFT80-021) 160377442-160399215 processed_transcript
ENST00000472555 (IFT80-024) 160303916-160357499 nonsense_mediated_decay
ENST00000472773 (IFT80-016) 160357485-160399223 processed_transcript
ENST00000475677 (IFT80-008) 160357485-160399544 protein_coding
ENST00000477495 (IFT80-013) 160373492-160399245 processed_transcript
ENST00000478278 (IFT80-028) 160258403-160268761 retained_intron
ENST00000478370 (IFT80-014) 160366083-160399223 protein_coding
ENST00000478460 (IFT80-017) 160319833-160399221 processed_transcript
ENST00000478536 (IFT80-007) 160381569-160399544 protein_coding
ENST00000482317 (IFT80-019) 160375819-160399216 nonsense_mediated_decay
ENST00000483325 (IFT80-026) 160299079-160307781 protein_coding
ENST00000483465 (IFT80-004) 160256992-160383656 protein_coding
ENST00000484963 (IFT80-023) 160356013-160377454 nonsense_mediated_decay
ENST00000486856 (IFT80-020) 160366083-160399216 protein_coding
ENST00000487943 (IFT80-003) 160258185-160399209 retained_intron
ENST00000489004 (IFT80-012) 160377436-160399247 protein_coding
ENST00000496589 (IFT80-002) 160258180-160399273 protein_coding
ENST00000498145 (IFT80-010) 160381605-160399520 processed_transcript
ENST00000498409 (IFT80-009) 160366053-160399533 protein_coding
ENSG00000213186 (TRIM59)
tripartite motif containing 59 		ENST00000309784 (TRIM59-001) 160435503-160449829 protein_coding
ENST00000468542 (TRIM59-009) 160439001-160485773 protein_coding
ENST00000471155 (TRIM59-004) 160438841-160449765 protein_coding
ENST00000471396 (TRIM59-005) 160438719-160449763 protein_coding
ENST00000479460 (TRIM59-007) 160438651-160449725 protein_coding
ENST00000494486 (TRIM59-008) 160438849-160449613 protein_coding
ENST00000496222 (TRIM59-006) 160438731-160449760 protein_coding
ENST00000543469 (TRIM59-201) 160432445-160448937 protein_coding
ENSG00000243687 (RP11-432B6.1)
 ENST00000489757 (RP11-432B6.1-001) 160342685-160343015 processed_pseudogene

Homo sapiens Ensembl (GRCh38)

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CIL_0004JR_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000027778-ENSMUSG00000034349 CGP 10090 3:68892499-69034623
GeneTranscriptPositionBiotype
ENSMUSG00000027778 (Ift80)
intraflagellar transport 80 		ENSMUST00000029347 (Ift80-201) 68892525-68994537 protein_coding
ENSMUST00000107812 (Ift80-001) 68892499-69004543 protein_coding
ENSMUST00000136176 (Ift80-004) 68893645-68920105 retained_intron
ENSMUST00000136448 (Ift80-002) 68892499-69004559 retained_intron
ENSMUST00000148031 (Ift80-005) 68967920-69004484 protein_coding
ENSMUST00000152502 (Ift80-003) 68917445-69004498 retained_intron
ENSMUST00000154741 (Ift80-006) 68963635-69004477 protein_coding
ENSMUST00000169064 (Ift80-202) 68892525-69004570 protein_coding
ENSMUST00000176135 (Ift80-007) 68973304-69004388 processed_transcript
ENSMUST00000176189 (Ift80-008) 68914766-68915115 retained_intron
ENSMUST00000176754 (Ift80-009) 68940128-68973745 processed_transcript
ENSMUSG00000034349 (Smc4)
structural maintenance of chromosomes 4 		ENSMUST00000042901 (Smc4-001) 69004738-69034623 protein_coding
ENSMUST00000107803 (Smc4-004) 69004991-69034618 protein_coding
ENSMUST00000124983 (Smc4-006) 69016696-69019327 processed_transcript
ENSMUST00000128118 (Smc4-009) 69030373-69033083 retained_intron
ENSMUST00000128134 (Smc4-005) 69016490-69018173 retained_intron
ENSMUST00000136502 (Smc4-003) 69004970-69018108 protein_coding
ENSMUST00000148385 (Smc4-002) 69005008-69034623 nonsense_mediated_decay
ENSMUST00000149174 (Smc4-008) 69024194-69027900 processed_transcript
ENSMUST00000156354 (Smc4-007) 69018915-69021400 retained_intron
ENSMUSG00000065580 (Mir15b)
microRNA 15b 		ENSMUST00000083646 (Mir15b-201) 69009756-69009853 miRNA
ENSMUSG00000093384 (Gm20689)
predicted gene 20689 		ENSMUST00000176033 (Gm20689-001) 68900171-68900449 processed_pseudogene
ENSMUSG00000093402 (Gm18588)
predicted gene, 18588 		ENSMUST00000177308 (Gm18588-001) 68902267-68902758 processed_pseudogene
ENSMUSG00000093505 (Gm20691)
predicted gene 20691 		ENSMUST00000176889 (Gm20691-001) 68903820-68904152 processed_pseudogene
ENSMUSG00000093730 (Gm20690)
predicted gene 20690 		ENSMUST00000177341 (Gm20690-001) 68901830-68902144 processed_pseudogene

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004JR_0001ENSDARG00000038879ENSDART00000056763ENSDART00000133943ENSDART00000142319ENSDARG00000038882ENSDART00000056765ENSDART00000130413ENSDART00000133909CIL_0004JR_0002ENSG00000068885ENST00000326448ENST00000461213ENST00000463240ENST00000465537ENST00000465972ENST00000466326ENST00000467254ENST00000468218ENST00000468327ENST00000472555ENST00000472773ENST00000475677ENST00000477495ENST00000478278ENST00000478370ENST00000478460ENST00000478536ENST00000482317ENST00000483325ENST00000483465ENST00000484963ENST00000486856ENST00000487943ENST00000489004ENST00000496589ENST00000498145ENST00000498409ENSG00000213186ENST00000309784ENST00000468542ENST00000471155ENST00000471396ENST00000479460ENST00000494486ENST00000496222ENST00000543469ENSG00000243687ENST00000489757CIL_0004JR_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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004JR_0001ENSDARG00000038879ENSDART00000056763ENSDART00000133943ENSDARG00000038882ENSDART00000056765ENSDART00000130413ENSDART00000133909CIL_0004JR_0002ENSG00000068885ENST00000326448ENST00000483465ENST00000487943ENST00000496589ENSG00000213186ENST00000309784ENST00000543469ENSG00000243687ENST00000489757CIL_0004JR_0003ENSMUSG00000027778ENSMUST00000029347ENSMUST00000107812ENSMUST00000136176ENSMUST00000136448ENSMUST00000169064ENSMUST00000176135ENSMUSG00000034349ENSMUST00000042901ENSMUST00000107803ENSMUST00000136502ENSMUST00000148385ENSMUST00000149174ENSMUSG00000065580ENSMUST00000083646ENSMUSG00000093384ENSMUST00000176033ENSMUSG00000093402ENSMUST00000177308ENSMUSG00000093505ENSMUST00000176889ENSMUSG00000093730ENSMUST00000177341
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000038879 ENSDART00000056763 N/A N/A N/A 7.571±0.36 N/A N/A 3.215±0.38 1.944±0.00 N/A N/A 1.273±0.00 N/A N/A N/A
ENSDART00000133943 N/A N/A N/A N/A N/A N/A N/A 0.738±0.00 N/A N/A N/A N/A N/A N/A
ENSDART00000142319 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000038882 ENSDART00000056765 N/A N/A N/A 0.198±0.00 N/A N/A 0.299±0.00 N/A N/A N/A 0.257±0.00 N/A N/A N/A
ENSDART00000130413 N/A N/A N/A 0.367±0.35 N/A N/A 0.738±0.00 13.128±0.00 0.404±0.00 N/A 0.125±0.00 N/A N/A N/A
ENSDART00000133909 N/A N/A N/A 0.222±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000068885 ENST00000326448 N/A N/A N/A 2.037±0.00 1.880±0.00 1.266±0.00 0.768±0.00 2.872±0.00 N/A 2.397±0.00 0.258±0.00 2.530±0.00 0.801±0.13 5.419±0.00
ENST00000461213 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000463240 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000465537 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000465972 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000466326 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000467254 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000468218 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000468327 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000472555 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000472773 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000475677 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000477495 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000478278 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000478370 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000478460 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000478536 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000482317 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000483325 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000483465 0.806±0.00 2.077±0.00 N/A 2.583±0.54 N/A N/A 1.035±0.00 N/A 1.202±0.38 N/A N/A 3.601±0.00 N/A N/A
ENST00000484963 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000486856 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000487943 N/A N/A N/A 2.131±0.00 N/A N/A 0.998±0.00 N/A 1.890±0.00 5.640±0.00 N/A N/A N/A N/A
ENST00000489004 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000496589 N/A N/A 1.920±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000498145 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000498409 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000213186 ENST00000309784 N/A N/A N/A 2.812±0.64 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000468542 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000471155 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000471396 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000479460 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000494486 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000496222 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000543469 0.888±0.00 N/A N/A N/A 1.072±0.00 1.295±0.00 1.010±0.00 1.834±0.00 0.729±0.00 1.826±0.00 0.538±0.00 N/A N/A 3.290±0.00
ENSG00000243687 ENST00000489757 N/A 0.076±0.00 N/A N/A 0.293±0.00 0.327±0.00 N/A 0.585±0.00 N/A 0.131±0.00 N/A 0.779±0.68 N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000027778 ENSMUST00000029347 N/A 0.640±0.00 N/A 1.003±0.09 0.822±0.00 0.163±0.00 N/A N/A 0.647±0.27 N/A 0.713±0.28 2.512±0.79 0.667±0.10 N/A
ENSMUST00000107812 N/A N/A N/A N/A N/A N/A N/A N/A 1.048±0.22 N/A N/A 0.866±0.03 0.260±0.00 N/A
ENSMUST00000136176 N/A N/A N/A N/A N/A N/A N/A N/A 0.203±0.00 N/A N/A N/A 1.109±0.00 5.126±1.26
ENSMUST00000136448 0.627±0.18 0.926±0.14 0.454±0.00 0.487±0.12 1.000±0.22 0.481±0.20 0.317±0.03 0.472±0.25 0.577±0.34 0.728±0.33 0.068±0.02 0.639±0.19 0.230±0.07 N/A
ENSMUST00000148031 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000152502 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000154741 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000169064 1.301±1.00 0.627±0.04 3.821±0.68 2.993±1.01 1.138±0.38 0.504±0.33 0.675±0.28 2.125±0.53 2.461±2.07 2.342±0.07 0.808±0.19 2.069±0.67 1.459±0.57 12.796±3.61
ENSMUST00000176135 N/A N/A N/A 15.842±0.00 N/A N/A N/A N/A N/A N/A N/A 28.987±0.00 7.273±3.88 105.470±0.00
ENSMUST00000176189 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000176754 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000034349 ENSMUST00000042901 1.204±0.65 2.576±0.00 2.130±0.38 5.517±1.80 2.911±1.06 3.002±1.06 0.384±0.08 1.188±0.61 13.649±12.80 1.842±0.21 0.831±0.36 3.825±1.20 12.061±1.96 18.639±0.71
ENSMUST00000107803 N/A 7.135±1.83 1.044±0.16 1.382±0.25 N/A 2.332±0.19 N/A N/A 3.172±4.58 0.980±0.00 0.327±0.13 12.213±12.13 25.767±31.97 58.924±77.27
ENSMUST00000124983 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000128118 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000128134 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000136502 1.294±0.00 8.604±4.18 N/A N/A 7.595±0.49 3.752±0.07 0.568±0.00 1.121±0.46 0.741±0.30 2.322±0.23 N/A 7.543±3.30 N/A N/A
ENSMUST00000148385 0.380±0.00 1.395±0.00 0.925±0.27 1.393±0.58 1.841±0.00 N/A 0.177±0.00 0.379±0.08 4.339±3.71 N/A 0.818±0.30 4.230±2.47 4.075±1.96 N/A
ENSMUST00000149174 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 505.613±0.00
ENSMUST00000156354 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000065580 ENSMUST00000083646 N/A N/A N/A N/A N/A N/A N/A N/A 103.312±0.00 N/A N/A N/A 70.238±0.00 N/A
ENSMUSG00000093384 ENSMUST00000176033 0.870±0.49 N/A N/A N/A 1.078±0.61 1.891±0.00 0.789±0.01 0.848±0.14 0.263±0.15 1.299±0.69 0.351±0.00 2.254±0.00 N/A 1.016±0.64
ENSMUSG00000093402 ENSMUST00000177308 9.917±2.41 3.413±0.56 0.248±0.07 1.888±0.72 12.499±3.37 3.042±2.21 4.376±1.38 6.215±2.37 3.342±2.96 7.697±1.09 0.229±0.10 14.311±9.67 0.221±0.13 8.035±1.84
ENSMUSG00000093505 ENSMUST00000176889 2.014±0.92 0.879±0.49 0.290±0.04 2.336±1.65 3.002±1.52 0.794±0.39 0.833±0.30 0.828±0.58 0.503±0.54 3.184±0.88 N/A 4.498±2.61 0.578±0.04 2.359±0.50
ENSMUSG00000093730 ENSMUST00000177341 N/A N/A 0.054±0.00 0.272±0.00 N/A N/A N/A 0.218±0.00 0.197±0.13 0.323±0.00 0.315±0.00 0.797±0.26 0.033±0.00 0.210±0.00

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