C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: structural maintenance of chromosomes 4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000034349 Smc4 10090 + 3:69004738-69034623 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000042901 Smc4-001 69004738-69034623 protein_coding
  ENSMUST00000107803 Smc4-004 69004991-69034618 protein_coding
  ENSMUST00000124983 Smc4-006 69016696-69019327 processed_transcript
  ENSMUST00000128118 Smc4-009 69030373-69033083 retained_intron
  ENSMUST00000128134 Smc4-005 69016490-69018173 retained_intron
  ENSMUST00000136502 Smc4-003 69004970-69018108 protein_coding
  ENSMUST00000148385 Smc4-002 69005008-69034623 nonsense_mediated_decay
  ENSMUST00000149174 Smc4-008 69024194-69027900 processed_transcript
  ENSMUST00000156354 Smc4-007 69018915-69021400 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000042901ENSMUST00000107803ENSMUST00000136502ENSMUST00000148385ENSMUST00000149174
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000042901 1.204±0.65 2.576±0.00 2.130±0.38 5.517±1.80 2.911±1.06 3.002±1.06 0.384±0.08 1.188±0.61 13.649±12.80 1.842±0.21 0.831±0.36 3.825±1.20 12.061±1.96 18.639±0.71
ENSMUST00000107803 N/A 7.135±1.83 1.044±0.16 1.382±0.25 N/A 2.332±0.19 N/A N/A 3.172±4.58 0.980±0.00 0.327±0.13 12.213±12.13 25.767±31.97 58.924±77.27
ENSMUST00000136502 1.294±0.00 8.604±4.18 N/A N/A 7.595±0.49 3.752±0.07 0.568±0.00 1.121±0.46 0.741±0.30 2.322±0.23 N/A 7.543±3.30 N/A N/A
ENSMUST00000148385 0.380±0.00 1.395±0.00 0.925±0.27 1.393±0.58 1.841±0.00 N/A 0.177±0.00 0.379±0.08 4.339±3.71 N/A 0.818±0.30 4.230±2.47 4.075±1.96 N/A
ENSMUST00000149174 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 505.613±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004JR CIL_0004JR_0003 CGP 3:68892499-69034623
CIL_0004JQ CIL_0004JQ_0003 CGP 3:69004738-69044755

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000796 IEA condensin complex
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005634 IEA nucleus
GO:0005694 IEA chromosome
GO:0005737 IEA cytoplasm
GO:0007076 ISS mitotic chromosome condensation
GO:0010032 IMP meiotic chromosome condensation
GO:0045132 IMP meiotic chromosome segregation
GO:0046982 ISS protein heterodimerization activity
GO:0051383 IMP kinetochore organization

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000038882 smc4 structural maintenance of chromosomes 4 protein_coding Danio_rerio
ENSG00000113810 SMC4 structural maintenance of chromosomes 4 protein_coding Homo_sapiens

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