C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: syntrophin, basic 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSDARG00000041729 sntb1 7955 - 16:17459976-17558409 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSDART00000061164 sntb1-201 17459976-17558354 protein_coding
  ENSDART00000125691 sntb1-001 17460293-17558409 protein_coding

Danio rerio EnsemblZv9

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Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000061164ENSDART00000125691
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000061164 2.048±0.34 11.309±2.90 5.563±0.93 0.309±0.00 1.409±0.00
ENSDART00000125691 0.835±0.00 3.498±0.00 N/A N/A 0.262±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002GD CIL_0002GD_0001 CGP 16:17392873-17558409
CIL_0002EA CIL_0002EA_0001 CGP 16:17459976-17767770

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000172164 SNTB1 syntrophin, beta 1 (dystrophin-associated protein A1, 59kDa, basic component 1) protein_coding Homo_sapiens
ENSMUSG00000060429 Sntb1 syntrophin, basic 1 protein_coding Mus_musculus

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