C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0002EA_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000041729-ENSDARG00000036987 CGP 7955 16:17459976-17767770
GeneTranscriptPositionBiotype
ENSDARG00000036987 (has2)
hyaluronan synthase 2 		ENSDART00000018931 (has2-201) 17749945-17757037 protein_coding
ENSDART00000053754 (has2-001) 17749945-17767770 protein_coding
ENSDARG00000041729 (sntb1)
syntrophin, basic 1 		ENSDART00000061164 (sntb1-201) 17459976-17558354 protein_coding
ENSDART00000125691 (sntb1-001) 17460293-17558409 protein_coding
ENSDARG00000095387 (si:ch211-221n14.26)
si:ch211-221n14.26 		ENSDART00000136139 (si:ch211-221n14.26-001) 17689972-17690852 processed_transcript

Danio rerio Ensembl (Zv9)

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CIL_0002EA_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000172164-ENSG00000170961 CGP 9606 8:120535745-121641390
GeneTranscriptPositionBiotype
ENSG00000170961 (HAS2)
hyaluronan synthase 2 		ENST00000303924 (HAS2-001) 121612116-121641390 protein_coding
ENSG00000172164 (SNTB1)
syntrophin, beta 1 (dystrophin-associated protein A1, 59kDa, basic component 1) 		ENST00000395601 (SNTB1-001) 120535745-120813273 protein_coding
ENST00000517992 (SNTB1-002) 120538521-120812143 protein_coding
ENST00000519177 (SNTB1-003) 120570259-120811563 processed_transcript
ENST00000519298 (SNTB1-005) 120632610-120693908 processed_transcript
ENST00000520717 (SNTB1-004) 120811759-120812852 protein_coding
ENSG00000172167 (MTBP)
MDM2 binding protein 		ENST00000305949 (MTBP-001) 120445426-120523635 protein_coding
ENST00000456899 (MTBP-005) 120445400-120451335 retained_intron
ENST00000519188 (MTBP-006) 120488161-120490703 retained_intron
ENST00000519556 (MTBP-007) 120518703-120541965 nonsense_mediated_decay
ENST00000519841 (MTBP-008) 120538695-120542133 processed_transcript
ENST00000522308 (MTBP-002) 120445422-120452829 retained_intron
ENST00000522449 (MTBP-004) 120459276-120473950 retained_intron
ENST00000523373 (MTBP-003) 120445422-120470937 nonsense_mediated_decay
ENSG00000239872 (RPL35AP19)
ribosomal protein L35a pseudogene 19 		ENST00000469425 (RPL35AP19-001) 121380137-121380465 processed_pseudogene
ENSG00000248318 (RP11-713M15.1)
 ENST00000509350 (RP11-713M15.1-001) 120761253-120776832 antisense
ENSG00000250290 (CTC-820M8.1)
 ENST00000505112 (CTC-820M8.1-001) 120635558-120638204 processed_pseudogene
ENSG00000253619 (RP11-369K17.1)
 ENST00000517739 (RP11-369K17.1-001) 120913065-121119754 lincRNA
ENSG00000263525 (AC022909.1)
 ENST00000583308 (AC022909.1-201) 121542897-121542995 miRNA
ENSG00000271219 (RP11-369K17.2)
 ENST00000604710 (RP11-369K17.2-001) 121113358-121113919 processed_pseudogene
ENSG00000272502 (RP11-713M15.2)
 ENST00000605955 (RP11-713M15.2-001) 120812219-120813359 antisense

Homo sapiens Ensembl (GRCh38)

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CIL_0002EA_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000060429-ENSMUSG00000022367 CGP 10090 15:55638843-56694539
GeneTranscriptPositionBiotype
ENSMUSG00000022367 (Has2)
hyaluronan synthase 2 		ENSMUST00000050544 (Has2-001) 56665627-56694539 protein_coding
ENSMUSG00000060429 (Sntb1)
syntrophin, basic 1 		ENSMUST00000039769 (Sntb1-001) 55638843-55906949 protein_coding
ENSMUST00000110200 (Sntb1-002) 55790964-55906722 protein_coding
ENSMUST00000140574 (Sntb1-003) 55791938-55906310 processed_transcript
ENSMUSG00000086541 (Has2os)
hyaluronan synthase 2, opposite strand 		ENSMUST00000125401 (Has2os-001) 56689944-56694460 antisense
ENSMUST00000163314 (Has2os-002) 56693954-56778115 antisense
ENSMUST00000165880 (Has2os-004) 56765460-56778078 lincRNA
ENSMUST00000166290 (Has2os-003) 56693552-56778399 antisense

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002EA_0001ENSDARG00000036987ENSDART00000018931ENSDART00000053754ENSDARG00000041729ENSDART00000061164ENSDART00000125691ENSDARG00000095387ENSDART00000136139CIL_0002EA_0002ENSG00000170961ENST00000303924ENSG00000172164ENST00000395601ENST00000517992ENST00000519177ENST00000519298ENST00000520717ENSG00000172167ENST00000305949ENST00000456899ENST00000519188ENST00000519556ENST00000519841ENST00000522308ENST00000522449ENST00000523373ENSG00000239872ENST00000469425ENSG00000248318ENST00000509350ENSG00000250290ENST00000505112ENSG00000253619ENST00000517739ENSG00000263525ENST00000583308ENSG00000271219ENST00000604710ENSG00000272502ENST00000605955CIL_0002EA_0003ENSMUSG00000022367ENSMUST00000050544ENSMUSG00000060429ENSMUST00000039769ENSMUST00000110200ENSMUST00000140574ENSMUSG00000086541ENSMUST00000125401ENSMUST00000163314ENSMUST00000165880ENSMUST00000166290
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002EA_0001ENSDARG00000036987ENSDART00000018931ENSDART00000053754ENSDARG00000041729ENSDART00000061164ENSDART00000125691ENSDARG00000095387ENSDART00000136139CIL_0002EA_0002ENSG00000170961ENST00000303924ENSG00000172164ENST00000395601ENST00000517992ENSG00000172167ENST00000305949ENSG00000239872ENST00000469425ENSG00000248318ENST00000509350ENSG00000250290ENST00000505112ENSG00000253619ENST00000517739ENSG00000263525ENST00000583308ENSG00000271219ENST00000604710ENSG00000272502ENST00000605955CIL_0002EA_0003ENSMUSG00000022367ENSMUST00000050544ENSMUSG00000060429ENSMUST00000039769ENSMUST00000140574ENSMUSG00000086541ENSMUST00000125401ENSMUST00000163314ENSMUST00000165880ENSMUST00000166290
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000036987 ENSDART00000018931 N/A N/A N/A 0.758±0.38 N/A N/A 0.422±0.12 0.286±0.04 0.073±0.00 N/A N/A N/A N/A N/A
ENSDART00000053754 N/A N/A N/A 0.065±0.07 N/A N/A 0.371±0.00 0.099±0.00 N/A N/A 1.756±0.00 N/A N/A N/A
ENSDARG00000041729 ENSDART00000061164 N/A N/A N/A 2.048±0.34 N/A N/A 11.309±2.90 5.563±0.93 0.309±0.00 N/A 1.409±0.00 N/A N/A N/A
ENSDART00000125691 N/A N/A N/A 0.835±0.00 N/A N/A 3.498±0.00 N/A N/A N/A 0.262±0.00 N/A N/A N/A
ENSDARG00000095387 ENSDART00000136139 N/A N/A N/A 0.248±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000170961 ENST00000303924 3.715±0.00 1.426±0.00 0.261±0.00 0.100±0.00 0.641±0.18 0.946±0.38 0.477±0.23 0.212±0.16 0.615±0.57 0.910±0.01 0.014±0.00 0.483±0.25 0.684±0.44 0.400±0.17
ENSG00000172164 ENST00000395601 N/A N/A N/A 1.032±0.56 N/A N/A 0.610±0.00 6.567±0.00 25.569±0.00 N/A N/A N/A N/A N/A
ENST00000517992 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 9.976±0.00 2.199±0.00 2.664±0.00
ENST00000519177 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000519298 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000520717 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000172167 ENST00000305949 N/A N/A N/A N/A 1.554±0.00 N/A N/A N/A N/A N/A N/A 2.391±1.13 0.805±0.00 2.540±0.00
ENST00000456899 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000519188 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000519556 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000519841 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000522308 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000522449 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000523373 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000239872 ENST00000469425 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.038±0.00 N/A N/A N/A N/A
ENSG00000248318 ENST00000509350 0.020±0.00 0.027±0.00 0.026±0.00 0.028±0.00 N/A N/A 0.022±0.01 0.020±0.00 0.058±0.00 N/A N/A 0.016±0.00 0.020±0.00 0.513±0.06
ENSG00000250290 ENST00000505112 N/A 0.011±0.00 0.023±0.00 N/A 0.358±0.00 0.050±0.00 0.025±0.02 0.228±0.21 0.031±0.01 0.162±0.00 N/A 0.609±0.63 0.037±0.02 0.076±0.07
ENSG00000253619 ENST00000517739 N/A N/A N/A 0.015±0.00 N/A N/A N/A N/A N/A 0.084±0.00 0.064±0.00 N/A N/A N/A
ENSG00000263525 ENST00000583308 1.230±0.00 2.821±0.00 N/A 1.365±0.00 2.118±0.00 N/A 0.244±0.00 N/A N/A 1.595±0.00 N/A N/A N/A 1.893±0.00
ENSG00000271219 ENST00000604710 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.035±0.00
ENSG00000272502 ENST00000605955 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 12.227±0.52
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000022367 ENSMUST00000050544 1.165±0.62 0.039±0.00 0.524±0.02 0.678±0.52 1.190±0.21 0.378±0.08 0.199±0.03 0.022±0.01 0.114±0.09 0.148±0.04 0.093±0.02 0.160±0.11 0.284±0.28 0.011±0.00
ENSMUSG00000060429 ENSMUST00000039769 6.773±1.89 8.122±2.35 0.686±0.00 0.641±0.51 4.958±1.14 0.737±0.11 0.791±0.09 1.292±0.55 4.302±1.91 4.550±1.89 0.655±0.14 2.254±0.93 2.445±0.00 0.091±0.05
ENSMUST00000110200 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000140574 N/A N/A N/A N/A N/A 0.792±0.00 N/A N/A N/A N/A N/A N/A N/A 0.206±0.07
ENSMUSG00000086541 ENSMUST00000125401 N/A N/A N/A N/A N/A N/A N/A 0.117±0.00 N/A N/A N/A N/A N/A N/A
ENSMUST00000163314 N/A N/A N/A N/A N/A 0.367±0.00 N/A N/A N/A 0.382±0.00 N/A N/A N/A N/A
ENSMUST00000165880 N/A N/A N/A N/A 0.915±0.00 0.670±0.11 N/A 0.200±0.11 N/A 0.259±0.10 N/A 0.081±0.00 N/A N/A
ENSMUST00000166290 0.664±0.04 N/A N/A N/A 0.763±0.23 0.347±0.16 0.152±0.00 0.043±0.00 N/A 0.198±0.00 0.116±0.03 0.312±0.32 N/A 0.052±0.01

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