C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: syntrophin, basic 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000060429 Sntb1 10090 - 15:55638843-55906949 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000039769 Sntb1-001 55638843-55906949 protein_coding
  ENSMUST00000110200 Sntb1-002 55790964-55906722 protein_coding
  ENSMUST00000140574 Sntb1-003 55791938-55906310 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000039769ENSMUST00000140574
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000039769 6.773±1.89 8.122±2.35 0.686±0.00 0.641±0.51 4.958±1.14 0.737±0.11 0.791±0.09 1.292±0.55 4.302±1.91 4.550±1.89 0.655±0.14 2.254±0.93 2.445±0.00 0.091±0.05
ENSMUST00000140574 N/A N/A N/A N/A N/A 0.792±0.00 N/A N/A N/A N/A N/A N/A N/A 0.206±0.07

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002GD CIL_0002GD_0003 CGP 15:55557408-55906949
CIL_0002EA CIL_0002EA_0003 CGP 15:55638843-56694539

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003779 IEA actin binding
GO:0005515 IPI protein binding
GO:0005516 IEA calmodulin binding
GO:0005737 IEA cytoplasm
GO:0005856 IEA cytoskeleton
GO:0005886 IEA plasma membrane
GO:0005925 IEA focal adhesion
GO:0030054 IEA cell junction
GO:0030165 IEA PDZ domain binding
GO:0043234 ISO protein complex
GO:0045202 IDA synapse

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000041729 sntb1 syntrophin, basic 1 protein_coding Danio_rerio
ENSG00000172164 SNTB1 syntrophin, beta 1 (dystrophin-associated protein A1, 59kDa, basic component 1) protein_coding Homo_sapiens

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