C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: syntrophin, beta 1 (dystrophin-associated protein A1, 59kDa, basic component 1)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000172164 SNTB1 9606 - 8:120535745-120813273 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000395601 SNTB1-001 120535745-120813273 protein_coding
  ENST00000517992 SNTB1-002 120538521-120812143 protein_coding
  ENST00000519177 SNTB1-003 120570259-120811563 processed_transcript
  ENST00000519298 SNTB1-005 120632610-120693908 processed_transcript
  ENST00000520717 SNTB1-004 120811759-120812852 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverOvaryPlacentaTestisENST00000395601ENST00000517992
Transcript ID Brain Heart Kidney Liver Ovary Placenta Testis
ENST00000395601 1.032±0.56 0.610±0.00 6.567±0.00 25.569±0.00 N/A N/A N/A
ENST00000517992 N/A N/A N/A N/A 9.976±0.00 2.199±0.00 2.664±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00008U CIL_00008U_0002 CGP 8:120380761-120542133
CIL_0002GD CIL_0002GD_0002 CGP 8:120445400-120813273
CIL_0002EA CIL_0002EA_0002 CGP 8:120535745-121641390

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003779 IEA actin binding
GO:0005515 IPI:IEA protein binding
GO:0005516 IEA calmodulin binding
GO:0005737 IEA cytoplasm
GO:0005856 IEA cytoskeleton
GO:0005925 IDA focal adhesion
GO:0006936 TAS muscle contraction
GO:0016010 TAS dystrophin-associated glycoprotein complex
GO:0030165 IEA PDZ domain binding
GO:0043234 IDA protein complex
GO:0045202 IEA synapse

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000041729 sntb1 syntrophin, basic 1 protein_coding Danio_rerio
ENSMUSG00000060429 Sntb1 syntrophin, basic 1 protein_coding Mus_musculus

Loading