C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: nuclear receptor subfamily 1, group H, member 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSDARG00000043170 nr1h3 7955 - 7:35756118-35851568 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSDART00000063382 nr1h3-201 35756266-35776544 protein_coding
  ENSDART00000123268 nr1h3-202 35756118-35776269 protein_coding
  ENSDART00000130731 nr1h3-203 35757567-35851568 protein_coding

Danio rerio EnsemblZv9

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000063382ENSDART00000123268ENSDART00000130731
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000063382 3.206±0.00 2.648±0.00 2.120±0.00 N/A N/A
ENSDART00000123268 6.530±1.94 3.415±1.50 4.799±0.28 0.468±0.00 2.331±0.00
ENSDART00000130731 N/A N/A N/A 0.492±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00017Z CIL_00017Z_0001 CGP 7:35660425-35851568

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0003707 IEA steroid hormone receptor activity
GO:0004879 IDA ligand-activated sequence-specific DNA binding RNA polymerase II transcription factor activity
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-dependent
GO:0006357 IDA regulation of transcription from RNA polymerase II promoter
GO:0006366 IDA transcription from RNA polymerase II promoter
GO:0008270 IEA zinc ion binding
GO:0030522 IDA intracellular receptor signaling pathway
GO:0043401 IEA steroid hormone mediated signaling pathway
GO:0043565 IEA sequence-specific DNA binding
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000025434 NR1H3 nuclear receptor subfamily 1, group H, member 3 protein_coding Homo_sapiens
ENSMUSG00000002108 Nr1h3 nuclear receptor subfamily 1, group H, member 3 protein_coding Mus_musculus

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