C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nuclear receptor subfamily 1, group H, member 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000123268 nr1h3-202 ENSDARG00000043170 7955 - 7:35756118-35776269 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000123268
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000123268 6.530±1.94 3.415±1.50 4.799±0.28 0.468±0.00 2.331±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00017Z CIL_00017Z_0001 CGP 7:35660425-35851568

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0003707 IEA steroid hormone receptor activity
GO:0004879 IDA ligand-activated sequence-specific DNA binding RNA polymerase II transcription factor activity
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-dependent
GO:0006357 IDA regulation of transcription from RNA polymerase II promoter
GO:0006366 IDA transcription from RNA polymerase II promoter
GO:0008270 IEA zinc ion binding
GO:0030522 IDA intracellular receptor signaling pathway
GO:0043401 IEA steroid hormone mediated signaling pathway
GO:0043565 IEA sequence-specific DNA binding
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000395397 NR1H3-031 protein_coding Homo_sapiens 0 512
ENST00000405576 NR1H3-003 protein_coding Homo_sapiens 0 278
ENST00000405853 NR1H3-006 protein_coding Homo_sapiens 0 278
ENST00000407404 NR1H3-002 protein_coding Homo_sapiens 0 278
ENST00000441012 NR1H3-030 protein_coding Homo_sapiens 0 512
ENST00000462051 NR1H3-024 retained_intron Homo_sapiens 9e-37 158
ENST00000467728 NR1H3-001 protein_coding Homo_sapiens 0 512
ENST00000481020 NR1H3-005 retained_intron Homo_sapiens 0 278
ENST00000481889 NR1H3-023 protein_coding Homo_sapiens 0 278
ENST00000494018 NR1H3-025 retained_intron Homo_sapiens 7e-37 158
ENST00000527949 NR1H3-032 protein_coding Homo_sapiens 0 278
ENST00000529540 NR1H3-029 processed_transcript Homo_sapiens 0 512
ENST00000532630 NR1H3-036 processed_transcript Homo_sapiens 0 243
ENST00000616973 NR1H3-201 protein_coding Homo_sapiens 0 512

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