C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: LIM homeobox 9
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSDARG00000056979 lhx9 7955 - 22:24970015-24979988 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSDART00000054807 lhx9-001 24972414-24979972 protein_coding
  ENSDART00000079556 lhx9-201 24970015-24979988 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000054807ENSDART00000079556
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000054807 14.022±2.02 0.480±0.00 N/A 0.268±0.00 0.518±0.00
ENSDART00000079556 9.700±0.00 0.132±0.00 0.151±0.00 N/A 0.642±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007N3 CIL_0007N3_0003 UCNEbase 22:24476568-25083877
CIL_00055T CIL_00055T_0001 CGP 22:24831550-24979988
CIL_00055W CIL_00055W_0001 CGP 22:24970015-24994384

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0003714 ISS transcription corepressor activity
GO:0005634 IEA nucleus
GO:0006355 IEA regulation of transcription, DNA-dependent
GO:0008045 ISS motor neuron axon guidance
GO:0008270 IEA zinc ion binding
GO:0021794 IGI thalamus development
GO:0043565 IEA sequence-specific DNA binding
GO:0045892 ISS negative regulation of transcription, DNA-dependent
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000143355 LHX9 LIM homeobox 9 protein_coding Homo_sapiens
ENSMUSG00000019230 Lhx9 LIM homeobox protein 9 protein_coding Mus_musculus

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