C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: LIM homeobox 9
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000143355 LHX9 9606 + 1:197911902-197935478 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000367387 LHX9-004 197917399-197935476 protein_coding
  ENST00000367388 LHX9-005 197917355-197918766 protein_coding
  ENST00000367390 LHX9-001 197912505-197935478 protein_coding
  ENST00000367391 LHX9-003 197912491-197932591 protein_coding
  ENST00000475727 LHX9-006 197912488-197917959 protein_coding
  ENST00000561173 LHX9-007 197915837-197932266 protein_coding
  ENST00000606127 LHX9-009 197911902-197917991 protein_coding
  ENST00000615520 LHX9-010 197912130-197913180 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000367387ENST00000367388ENST00000367390ENST00000367391ENST00000475727ENST00000561173ENST00000615520
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000367387 N/A N/A N/A N/A N/A N/A 0.012±0.00 N/A N/A 0.076±0.00 0.006±0.00 0.405±0.26 N/A 0.626±0.52
ENST00000367388 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.159±0.00 N/A N/A N/A
ENST00000367390 0.008±0.00 N/A N/A 0.032±0.01 N/A 0.016±0.01 0.019±0.00 0.005±0.00 0.023±0.01 0.049±0.00 N/A N/A 0.008±0.00 N/A
ENST00000367391 N/A 0.036±0.00 0.089±0.00 0.044±0.00 N/A N/A N/A N/A 0.088±0.00 0.062±0.00 N/A 1.473±0.27 N/A 2.487±0.00
ENST00000475727 N/A 0.206±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000561173 0.047±0.00 N/A N/A N/A 0.010±0.00 N/A N/A 0.025±0.00 N/A N/A N/A N/A N/A N/A
ENST00000615520 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.201±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007N3 CIL_0007N3_0001 UCNEbase 1:197596839-198391876

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003714 ISS transcription corepressor activity
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0008045 ISS motor neuron axon guidance
GO:0008270 IEA zinc ion binding
GO:0008283 IEA cell proliferation
GO:0008584 IEA male gonad development
GO:0008585 IEA female gonad development
GO:0035262 IEA gonad morphogenesis
GO:0043565 IEA sequence-specific DNA binding
GO:0045892 ISS negative regulation of transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000056979 lhx9 LIM homeobox 9 protein_coding Danio_rerio
ENSMUSG00000019230 Lhx9 LIM homeobox protein 9 protein_coding Mus_musculus

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